Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

26907472 .. 26908891

Gene Structure 1420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTTTTTACGCCTTACAAAGGGAGAATGGATGACAACAATGCCTGAACATTTGAATATGGAATGGGTTGACAGCGTGAAGCATGTTTTTGAATATTTCACAGAGAGAACACCACGATCACGTTTTGAACTACGCGAAACTTCCCTTGTGTGGAATTATAAATATGCAGATTTTGATTTTGGAAGACTTCAAGCAAGAGATATGCTGCAGCATCTCTGGACTGGCCCGATTTCTAATGCCTCTCTTGATGTTGTTCAAGGTAGCCGATCTGTTGAGGTTCGAGCAGTTGGTGTGACAAAGGGTGCAGCAATTGACCGTATATTGGGAGAGATAGTTCACAGTAAATCCATGACGTCCCCCATTGATTATGTGCTGTGTATTGGACATTTTCTTGGCAAGGATGAAGATGTGTACACCTTTTTCGACCCAGATCTTCCGTCTGGGCCGATTGGTCTTCCAAGAAACAAGATACCCGATGGACTAAAGCCAAATGAGAGAAGATCTTCTTTGAAGGCTGCGGCAATCAAAAGCGGGTCAAAATCATCTCAGAGCAAGGCGCAACGGCTTTTACCAAACTCTGAGAAGAAAAATGCAAATCATAACACCACGAATCCACGATGGCCATCTCCAGAAAAGATTTCGTGGAACGTACTTGATCTGAAGAAGGAGAACTACTACTCTTGCTCTGTGGGGCGGACTCGCACAAATGCTCGCTATCTATTTCAGTCCTCGGATGATGTTGTCTCGTTTCTGAAGGAACTGGCCGGTGCATCTTCCGCAAGCGTTTCATCTTCCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009311 GO:0009312 GO:0009743 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033554 GO:0034637 GO:0035251 GO:0042221 GO:0042546 GO:0042578 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007 GO:0070413 GO:0070887 GO:0071310 GO:0071322 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

267

Amino Acids

30.03

Weight (kDa)

9.1

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	1 - 148	2.4e-42	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AatII	GACGTC	1 cut(s)	356
AccII	CGCG	1 cut(s)	135
AciI	CCGC	4 cut(s)	518, 531, 694, 777
AcoI	YGGCCR	2 cut(s)	620, 762
AcuI	CTGAAG	2 cut(s)	680, 773
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	2 cut(s)	413, 651
AfiI	CCNNNNNNNGG	3 cut(s)	19, 150, 322
AgsI	TTSAA	6 cut(s)	55, 92, 128, 191, 257, 511
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
Alw26I	GTCTC	1 cut(s)	748
AoxI	GGCC	4 cut(s)	223, 443, 620, 762
ApeKI	GCWGC	4 cut(s)	205, 208, 305, 515
Asp700I	GAANNNNTTC	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	2 cut(s)	224, 443
BalI	TGGCCA	1 cut(s)	622
BarI	GAAGNNNNNNTAC	2 cut(s)	656, 688
BbsI	GAAGAC	2 cut(s)	190, 446
BbvI	GCAGC	4 cut(s)	192, 220, 317, 502
BccI	CCATC	3 cut(s)	470, 612, 631
BceAI	ACGGC	1 cut(s)	578
BcoDI	GTCTC	1 cut(s)	748
BfmI	CTRYAG	1 cut(s)	206
BglII	AGATCT	2 cut(s)	430, 500
BisI	GCNGC	5 cut(s)	206, 209, 306, 516, 519
BlsI	GCNGC	5 cut(s)	207, 210, 307, 517, 520
BmgT120I	GGNCC	2 cut(s)	224, 443
BmsI	GCATC	2 cut(s)	220, 779
BpiI	GAAGAC	2 cut(s)	190, 446
BpmI	CTGGAG	1 cut(s)	612
BsaBI	GATNNNNATC	1 cut(s)	622
BsaHI	GRCGYC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	729
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 150, 322
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	2 cut(s)	226, 765
Bse8I	GATNNNNATC	1 cut(s)	622
BseDI	CCNNGG	1 cut(s)	729
BseGI	GGATG	3 cut(s)	36, 406, 739
BseJI	GATNNNNATC	1 cut(s)	622
BseLI	CCNNNNNNNGG	3 cut(s)	19, 150, 322
BseMII	CTCAG	2 cut(s)	560, 570
BseNI	ACTGG	2 cut(s)	226, 765
BseXI	GCAGC	4 cut(s)	192, 220, 317, 502
BsgI	GTGCAG	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	4 cut(s)	225, 445, 622, 764
BsiSI	CCGG	1 cut(s)	765
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	3 cut(s)	19, 150, 322
BsmAI	GTCTC	1 cut(s)	748
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	4 cut(s)	225, 445, 622, 764
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	5 cut(s)	116, 266, 430, 500, 655
BspACI	CCGC	4 cut(s)	518, 531, 694, 777
BspANI	GGCC	4 cut(s)	225, 445, 622, 764
BspCNI	CTCAG	2 cut(s)	559, 571
BspFNI	CGCG	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	764
BsrGI	TGTACA	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	226, 765
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	5 cut(s)	116, 266, 430, 500, 655
BssNI	GRCGYC	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	317, 341
BstACI	GRCGYC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	411
BstC8I	GCNNGC	2 cut(s)	712, 781
BstDEI	CTNAG	2 cut(s)	546, 579
BstENI	CCTNNNNNAGG	1 cut(s)	17
BstF5I	GGATG	3 cut(s)	36, 406, 739
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	5 cut(s)	119, 269, 433, 503, 658
BstMAI	GTCTC	1 cut(s)	748
BstMBI	GATC	5 cut(s)	116, 266, 430, 500, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	776
BstNSI	RCATGY	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	206
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	4 cut(s)	192, 220, 317, 502
BstV2I	GAAGAC	2 cut(s)	190, 446
BstX2I	RGATCY	2 cut(s)	430, 500
BstYI	RGATCY	2 cut(s)	430, 500
BsuRI	GGCC	4 cut(s)	225, 445, 622, 764
BtsCI	GGATG	3 cut(s)	36, 406, 739
Cac8I	GCNNGC	2 cut(s)	712, 781
CfoI	GCGC	1 cut(s)	559
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	2 cut(s)	224, 443
Csp6I	GTAC	2 cut(s)	412, 650
CviAII	CATG	2 cut(s)	83, 349
CviJI	RGCY	8 cut(s)	225, 264, 445, 487, 515, 565, 622, 764
CviKI_1	RGCY	8 cut(s)	225, 264, 445, 487, 515, 565, 622, 764
CviQI	GTAC	2 cut(s)	412, 650
DdeI	CTNAG	2 cut(s)	546, 579
DpnI	GATC	5 cut(s)	118, 268, 432, 502, 657
DpnII	GATC	5 cut(s)	116, 266, 430, 500, 655
EaeI	YGGCCR	2 cut(s)	620, 762
EciI	GGCGGA	1 cut(s)	709
Eco57I	CTGAAG	2 cut(s)	680, 773
EcoNI	CCTNNNNNAGG	1 cut(s)	17
FaeI	CATG	2 cut(s)	86, 352
FaiI	YATR	9 cut(s)	59, 84, 159, 165, 203, 320, 350, 369, 600
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	2 cut(s)	82, 348
FauI	CCCGC	1 cut(s)	524
Fnu4HI	GCNGC	5 cut(s)	206, 209, 306, 516, 519
FokI	GGATG	3 cut(s)	43, 413, 746
Fsp4HI	GCNGC	5 cut(s)	206, 209, 306, 516, 519
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	5 cut(s)	206, 209, 306, 516, 519
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	4 cut(s)	225, 445, 622, 764
HapII	CCGG	1 cut(s)	765
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	2 cut(s)	86, 352
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	2 cut(s)	610, 697
HpaII	CCGG	1 cut(s)	765
Hpy166II	GTNNAC	4 cut(s)	70, 337, 412, 414
Hpy188I	TCNGA	6 cut(s)	549, 580, 660, 733, 753, 796
Hpy188III	TCNNGA	3 cut(s)	217, 245, 629
Hpy8I	GTNNAC	4 cut(s)	70, 337, 412, 414
HpyAV	CCTTC	3 cut(s)	505, 658, 748
HpyCH4III	ACNGT	2 cut(s)	317, 341
HpyCH4IV	ACGT	3 cut(s)	121, 353, 648
HpyCH4V	TGCA	5 cut(s)	167, 208, 305, 593, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	776
HpyF3I	CTNAG	2 cut(s)	546, 579
HpySE526I	ACGT	3 cut(s)	121, 353, 648
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	86, 352
HspAI	GCGC	1 cut(s)	557
Kzo9I	GATC	5 cut(s)	116, 266, 430, 500, 655
LpnPI	CCDG	8 cut(s)	57, 202, 207, 426, 441, 642, 746, 778
Lsp1109I	GCAGC	4 cut(s)	192, 220, 317, 502
LweI	GCATC	2 cut(s)	220, 779
MaeII	ACGT	3 cut(s)	121, 353, 648
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	5 cut(s)	118, 268, 432, 502, 657
MboI	GATC	5 cut(s)	116, 266, 430, 500, 655
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	2 cut(s)	430, 500
MlsI	TGGCCA	1 cut(s)	622
MluCI	AATT	2 cut(s)	154, 309
MluNI	TGGCCA	1 cut(s)	622
MlyI	GAGTC	1 cut(s)	691
MnlI	CCTC	3 cut(s)	250, 268, 739
Mox20I	TGGCCA	1 cut(s)	622
MroXI	GAANNNNTTC	1 cut(s)	502
MscI	TGGCCA	1 cut(s)	622
Msp20I	TGGCCA	1 cut(s)	622
MspI	CCGG	1 cut(s)	765
MunI	CAATTG	1 cut(s)	309
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	776
NdeII	GATC	5 cut(s)	116, 266, 430, 500, 655
NlaIII	CATG	2 cut(s)	86, 352
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	502
PfeI	GAWTC	1 cut(s)	610
PkrI	GCNGC	5 cut(s)	207, 210, 307, 517, 520
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
PsiI	TTATAA	1 cut(s)	159
PspPI	GGNCC	2 cut(s)	224, 443
PstI	CTGCAG	1 cut(s)	210
PsuI	RGATCY	2 cut(s)	430, 500
RsaI	GTAC	2 cut(s)	413, 651
RsaNI	GTAC	2 cut(s)	412, 650
SatI	GCNGC	5 cut(s)	206, 209, 306, 516, 519
Sau3AI	GATC	5 cut(s)	116, 266, 430, 500, 655
Sau96I	GGNCC	2 cut(s)	224, 443
SchI	GAGTC	1 cut(s)	691
SetI	ASST	6 cut(s)	124, 262, 279, 356, 419, 651
SfaNI	GCATC	2 cut(s)	220, 779
SfcI	CTRYAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	154, 309
SsiI	CCGC	4 cut(s)	518, 531, 694, 777
SspI	AATATT	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	317, 341
TaiI	ACGT	3 cut(s)	124, 356, 651
TaqI	TCGA	2 cut(s)	280, 423
TasI	AATT	2 cut(s)	154, 309
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	1 cut(s)	610
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	4 cut(s)	205, 208, 305, 515
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	2 cut(s)	417, 777
TspGWI	ACGGA	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	17
XceI	RCATGY	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	502
ZraI	GACGTC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.