Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

27114626 .. 27115513

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGACCAACAAGGAAGACCTCGAGTTGACGAACCCAAATAATATAGTTGGTGGTAGAGAGTTTAAGAAATTGAGCAGTGTTTTGGCAGAAGCAGAGGAAGAAGACGACGCCACGAGACAGAATGGCTGGGAGGGGTGGACGGCAAACAATTTGGGAGTTGAGTTGTGTTGTTTTTTTTGTTGGTTAATTTTGTATAGGTTGGACGGCAAGCAAGAATCGAGCCAAATGAGTACCATAAGTGTTCAAAAAACTTCATGCCATAAGTGTTCAAAAAACTTCATCTCGGTGAAACAATTCCCCGACGCCAAGCTCCCGTCAGGAAGGCGAGCTTTCAACGTCCAAATTCTGAATGCGTGCCCAAGTGAGGACTGCCCAATTGGGCAAATCCGTCTGAGATGTGGCTCGTTTCACTCCGAGAGACCGATTAACGGGAGAATATTCAGGCGATTGAGCAAAAATGAGTGTCTTGTAAATGATGTGTACCATATTGCCACTGGTGGAACTGTCTCCCTTGAGTATGTTGCACCAAAGCAGATCCCTCTTGCCGTTTCCTCTATATCTTACTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.27

Weight (kDa)

7.51

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	91 - 187	1.2e-23	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	529
AcsI	RAATTY	1 cut(s)	342
AcyI	GRCGYC	2 cut(s)	108, 303
AfaI	GTAC	2 cut(s)	232, 482
AfiI	CCNNNNNNNGG	2 cut(s)	364, 428
AgsI	TTSAA	3 cut(s)	245, 270, 334
AluBI	AGCT	2 cut(s)	310, 329
AluI	AGCT	2 cut(s)	310, 329
Alw26I	GTCTC	3 cut(s)	109, 412, 511
AlwI	GGATC	1 cut(s)	529
Ama87I	CYCGRG	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	342
Asp700I	GAANNNNTTC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	359
BauI	CACGAG	1 cut(s)	112
BbsI	GAAGAC	2 cut(s)	21, 108
BceAI	ACGGC	3 cut(s)	156, 220, 530
BcoDI	GTCTC	3 cut(s)	109, 412, 511
BmeT110I	CYCGRG	1 cut(s)	20
BpiI	GAAGAC	2 cut(s)	21, 108
BpuEI	CTTGAG	1 cut(s)	533
BsaHI	GRCGYC	2 cut(s)	108, 303
BsaI	GGTCTC	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 428
Bse1I	ACTGG	1 cut(s)	499
BseLI	CCNNNNNNNGG	2 cut(s)	364, 428
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	499
BseSI	GKGCMC	1 cut(s)	359
BseYI	CCCAGC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	364, 428
BsmAI	GTCTC	3 cut(s)	109, 412, 511
BsmI	GAATGC	1 cut(s)	355
Bso31I	GGTCTC	1 cut(s)	412
BsoBI	CYCGRG	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	534
BspCNI	CTCAG	1 cut(s)	384
BspPI	GGATC	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	499
BssMI	GATC	1 cut(s)	534
BssNI	GRCGYC	2 cut(s)	108, 303
BssSI	CACGAG	1 cut(s)	112
Bst2BI	CACGAG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	505
BstACI	GRCGYC	2 cut(s)	108, 303
BstC8I	GCNNGC	3 cut(s)	209, 327, 355
BstDEI	CTNAG	1 cut(s)	392
BstKTI	GATC	1 cut(s)	537
BstMAI	GTCTC	3 cut(s)	109, 412, 511
BstMBI	GATC	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	359
BstV2I	GAAGAC	2 cut(s)	21, 108
BstX2I	RGATCY	1 cut(s)	534
BstYI	RGATCY	1 cut(s)	534
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	82, 492
Cac8I	GCNNGC	3 cut(s)	209, 327, 355
CseI	GACGC	2 cut(s)	116, 311
Csp6I	GTAC	2 cut(s)	231, 481
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	5 cut(s)	126, 222, 310, 329, 402
CviKI_1	RGCY	5 cut(s)	126, 222, 310, 329, 402
CviQI	GTAC	2 cut(s)	231, 481
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	1 cut(s)	536
DpnII	GATC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	20
FaeI	CATG	1 cut(s)	258
FaiI	YATR	8 cut(s)	44, 195, 236, 256, 261, 486, 519, 557
FalI	AAGNNNNNCTT	2 cut(s)	313, 345
FatI	CATG	1 cut(s)	254
GsaI	CCCAGC	1 cut(s)	130
HgaI	GACGC	2 cut(s)	116, 311
Hin1I	GRCGYC	2 cut(s)	108, 303
Hin1II	CATG	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	1 cut(s)	215
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	3 cut(s)	27, 138, 481
Hpy188I	TCNGA	3 cut(s)	348, 393, 415
Hpy188III	TCNNGA	1 cut(s)	318
Hpy8I	GTNNAC	3 cut(s)	27, 138, 481
Hpy99I	CGWCG	2 cut(s)	110, 305
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	524
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	2 cut(s)	108, 303
Hsp92II	CATG	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	4 cut(s)	112, 303, 427, 480
MaeII	ACGT	1 cut(s)	336
MalI	GATC	1 cut(s)	536
MboI	GATC	1 cut(s)	534
MboII	GAAGA	3 cut(s)	26, 110, 113
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	7 cut(s)	68, 148, 186, 293, 342, 375, 568
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	29, 88, 124, 358, 549, 562
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	3 cut(s)	63, 185, 426
MslI	CAYNNNNRTG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	355
NdeII	GATC	1 cut(s)	534
NlaIII	CATG	1 cut(s)	258
PaeR7I	CTCGAG	1 cut(s)	20
PctI	GAATGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	126
PspXI	VCTCGAGB	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	534
RsaI	GTAC	2 cut(s)	232, 482
RsaNI	GTAC	2 cut(s)	231, 481
RseI	CAYNNNNRTG	1 cut(s)	284
SaqAI	TTAA	3 cut(s)	63, 185, 426
Sau3AI	GATC	1 cut(s)	534
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	5 cut(s)	21, 200, 312, 331, 339
Sfr274I	CTCGAG	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	20, 512
SmoI	CTYRAG	2 cut(s)	20, 512
Sse9I	AATT	7 cut(s)	68, 148, 186, 293, 342, 375, 568
SspI	AATATT	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	21, 218
TaqII	GACCGA	1 cut(s)	436
TasI	AATT	7 cut(s)	68, 148, 186, 293, 342, 375, 568
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	63, 185, 426
Tru9I	TTAA	3 cut(s)	63, 185, 426
TscAI	CASTG	2 cut(s)	82, 499
TspDTI	ATGAA	2 cut(s)	243, 268
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	2 cut(s)	82, 499
XapI	RAATTY	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XhoI	CTCGAG	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.