Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

27587738 .. 27588853

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAGGACTTTCTTTCCCTCTGAGTCTGGTAAAGAACCACAGCTTAGTGCCCACAATCCACAGTCATGGCTCCAGGTGGAAAGAGGGAAGCTTTCCAAGCTGCCATCAAACTCCTCCTCTTCTTCTATAGAATCTCTTATCAAAGTCCCCGAGCCGCCAATACTCCCGTTCTATAAACCAATTGATTATGTCGAAGTTTTAGCTCAAATTCATGAAGAACTTGAGTTATGTCCTCCGCAGGGACAGTCGAATCTTTACTTGTTACAATTTCAGGTCTTTAGGGGCCTCGGAGAAGTCAAGCTGATGCGAAGAAGCCTTCGTGCAGCTTGGCAGAAAGCTAGCTCCATTCATGAGAAGCTCATATTTGGAGCATGGTTGAAGTATGAGAAGCAAGGGGAAGAGCATATTTCTGACTTGCTTGCCAGTTGTGATAAATGTGCGCAAGAATTTGGGCCGGTGGATATTTTGACTCAGCTTCCTATTGATGCAACTGTGAGTAGTACCAATGAGAATATTTCGATGAATGGGAACGAAATATCAAGAAATGTCAGTTTTAGAATTCAAGATGAGAGGGTAGATTGTGATAGGCAGAAAATATCAAGCCTTTCTGCTCCATTTCATGCCATGCTCAATGGGTGTTTCTCGGAATCATTTCGGGAGGACATAGATTTGTCGGAAAACAATATCAGTGCATCAGGTATGAGGACAATCAATGAGTTCAGTATAACTGGCAGTTTGAATGAAGTCCCTACTCATCTTTTGTTGGAAATATTAGCTTTTGCAAATAAATTTTGTTGCGAAAAGCTTAAAGATGCTTGCGACCGCAAACTTGCATCCCTGGTGTCTAATAGAGAAGATGCGGTAGAACTCATGGAGTATGCTCTTGAAGAGAACTGTCCTGTCCTTGCTGCGTCATGCTTACAAGTTTTCTTAAATAATCTTCCTGATTGTTTGAATGACAACCGAGTGGTGGATATATTCAGGCATGCTGATAGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006521 GO:0008150 GO:0009889 GO:0010364 GO:0010565 GO:0010817 GO:0019222 GO:0031323 GO:0031326 GO:0031335 GO:0032350 GO:0033238 GO:0042762 GO:0046885 GO:0050789 GO:0050794 GO:0051171 GO:0062012 GO:0065007 GO:0065008 GO:0080090 GO:1900908 GO:1900911

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB TPR_8

Protein Analysis

334

Amino Acids

37.53

Weight (kDa)

5.04

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	441
AciI	CCGC	4 cut(s)	155, 236, 823, 860
AcsI	RAATTY	4 cut(s)	207, 446, 558, 788
AfaI	GTAC	1 cut(s)	502
AfiI	CCNNNNNNNGG	2 cut(s)	239, 970
AgsI	TTSAA	5 cut(s)	379, 563, 739, 887, 955
AjnI	CCWGG	2 cut(s)	72, 837
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	283, 452
ApeKI	GCWGC	3 cut(s)	100, 323, 908
ApoI	RAATTY	4 cut(s)	207, 446, 558, 788
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	2 cut(s)	283, 452
AsuNHI	GCTAGC	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	87, 335, 895
BccI	CCATC	1 cut(s)	112
BciT130I	CCWGG	2 cut(s)	74, 839
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	4 cut(s)	101, 155, 324, 909
BlsI	GCNGC	4 cut(s)	102, 156, 325, 910
Bme1390I	CCNGG	2 cut(s)	74, 839
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	283, 452
BmiI	GGNNCC	2 cut(s)	71, 284
BmrFI	CCNGG	2 cut(s)	74, 839
BmsI	GCATC	6 cut(s)	294, 475, 701, 802, 842, 847
BmtI	GCTAGC	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	286, 837
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 970
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	2 cut(s)	423, 733
BseBI	CCWGG	2 cut(s)	74, 839
BseDI	CCNNGG	2 cut(s)	286, 837
BseGI	GGATG	1 cut(s)	833
BseLI	CCNNNNNNNGG	2 cut(s)	239, 970
BseMII	CTCAG	2 cut(s)	12, 485
BseNI	ACTGG	2 cut(s)	423, 733
BseRI	GAGGAG	2 cut(s)	103, 106
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	3 cut(s)	87, 335, 895
BsgI	GTGCAG	1 cut(s)	342
Bsh1285I	CGRYCG	1 cut(s)	823
BshFI	GGCC	2 cut(s)	285, 454
BsiEI	CGRYCG	1 cut(s)	823
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	3 cut(s)	131, 255, 731
BslI	CCNNNNNNNGG	2 cut(s)	239, 970
BsmFI	GGGAC	3 cut(s)	131, 255, 731
BsnI	GGCC	2 cut(s)	285, 454
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	52
BspACI	CCGC	4 cut(s)	155, 236, 823, 860
BspANI	GGCC	2 cut(s)	285, 454
BspCNI	CTCAG	2 cut(s)	13, 484
BspHI	TCATGA	2 cut(s)	211, 349
BspLI	GGNNCC	2 cut(s)	71, 284
BspOI	GCTAGC	1 cut(s)	342
BspQI	GCTCTTC	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	454
BsrI	ACTGG	2 cut(s)	423, 733
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	286, 837
Bst2UI	CCWGG	2 cut(s)	74, 839
Bst4CI	ACNGT	4 cut(s)	63, 246, 493, 896
Bst6I	CTCTTC	3 cut(s)	124, 393, 882
BstC8I	GCNNGC	4 cut(s)	340, 420, 817, 987
BstDEI	CTNAG	3 cut(s)	21, 44, 471
BstF5I	GGATG	1 cut(s)	833
BstHHI	GCGC	1 cut(s)	442
BstMCI	CGRYCG	1 cut(s)	823
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	2 cut(s)	74, 839
BstNSI	RCATGY	1 cut(s)	989
BstSCI	CCNGG	2 cut(s)	72, 837
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	87, 335, 895
BstXI	CCANNNNNNTGG	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	285, 454
BtsCI	GGATG	1 cut(s)	833
BtsIMutI	CAGTG	1 cut(s)	694
Cac8I	GCNNGC	4 cut(s)	340, 420, 817, 987
CciI	TCATGA	2 cut(s)	211, 349
CfoI	GCGC	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	283, 452
CseI	GACGC	1 cut(s)	900
Csp6I	GTAC	1 cut(s)	501
CviAII	CATG	9 cut(s)	66, 212, 350, 372, 620, 625, 871, 915, 986
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	3 cut(s)	21, 44, 471
Eam1104I	CTCTTC	3 cut(s)	124, 393, 882
EarI	CTCTTC	3 cut(s)	124, 393, 882
Eco88I	CYCGRG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	558
EcoRII	CCWGG	2 cut(s)	72, 837
FaeI	CATG	9 cut(s)	69, 215, 353, 375, 623, 628, 874, 918, 989
FaqI	GGGAC	3 cut(s)	131, 255, 731
FatI	CATG	9 cut(s)	65, 211, 349, 371, 619, 624, 870, 914, 985
Fnu4HI	GCNGC	4 cut(s)	101, 155, 324, 909
FokI	GGATG	1 cut(s)	820
Fsp4HI	GCNGC	4 cut(s)	101, 155, 324, 909
FspBI	CTAG	1 cut(s)	339
FspI	TGCGCA	1 cut(s)	441
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	4 cut(s)	101, 155, 324, 909
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	285, 454
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	900
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	9 cut(s)	69, 215, 353, 375, 623, 628, 874, 918, 989
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HindIII	AAGCTT	2 cut(s)	89, 803
HinfI	GANTC	5 cut(s)	23, 131, 250, 469, 647
HpaII	CCGG	1 cut(s)	455
Hpy188I	TCNGA	5 cut(s)	22, 290, 412, 646, 676
Hpy188III	TCNNGA	7 cut(s)	212, 350, 540, 563, 656, 884, 944
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	4 cut(s)	63, 246, 493, 896
HpyCH4V	TGCA	5 cut(s)	323, 488, 692, 782, 833
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	3 cut(s)	21, 44, 471
Hsp92II	CATG	9 cut(s)	69, 215, 353, 375, 623, 628, 874, 918, 989
HspAI	GCGC	1 cut(s)	440
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	4 cut(s)	75, 347, 368, 616
Lsp1109I	GCAGC	3 cut(s)	87, 335, 895
LweI	GCATC	6 cut(s)	294, 475, 701, 802, 842, 847
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	261
MboII	GAAGA	8 cut(s)	111, 114, 227, 321, 410, 866, 899, 932
MfeI	CAATTG	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	6 cut(s)	180, 207, 266, 446, 558, 788
MlyI	GAGTC	2 cut(s)	32, 463
MmeI	TCCRAC	2 cut(s)	654, 744
MnlI	CCTC	9 cut(s)	28, 77, 124, 127, 243, 296, 564, 652, 696
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	2 cut(s)	807, 932
MslI	CAYNNNNRTG	1 cut(s)	64
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	2 cut(s)	74, 839
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	2 cut(s)	74, 839
MwoI	GCNNNNNNNGC	1 cut(s)	97
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	9 cut(s)	69, 215, 353, 375, 623, 628, 874, 918, 989
NlaIV	GGNNCC	2 cut(s)	71, 284
NsbI	TGCGCA	1 cut(s)	441
NspI	RCATGY	1 cut(s)	989
PaeI	GCATGC	1 cut(s)	989
PagI	TCATGA	2 cut(s)	211, 349
PciSI	GCTCTTC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	3 cut(s)	131, 250, 647
PkrI	GCNGC	4 cut(s)	102, 156, 325, 910
PleI	GAGTC	2 cut(s)	31, 463
PpsI	GAGTC	2 cut(s)	31, 463
Psp6I	CCWGG	2 cut(s)	72, 837
PspGI	CCWGG	2 cut(s)	72, 837
PspN4I	GGNNCC	2 cut(s)	71, 284
PspPI	GGNCC	2 cut(s)	283, 452
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
RseI	CAYNNNNRTG	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	2 cut(s)	807, 932
SatI	GCNGC	4 cut(s)	101, 155, 324, 909
Sau96I	GGNCC	2 cut(s)	283, 452
SchI	GAGTC	2 cut(s)	32, 463
ScrFI	CCNGG	2 cut(s)	74, 839
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	6 cut(s)	294, 475, 701, 802, 842, 847
SfcI	CTRYAG	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SphI	GCATGC	1 cut(s)	989
Sse9I	AATT	6 cut(s)	180, 207, 266, 446, 558, 788
SsiI	CCGC	4 cut(s)	155, 236, 823, 860
SspI	AATATT	2 cut(s)	514, 771
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	72, 837
TaaI	ACNGT	4 cut(s)	63, 246, 493, 896
TaqI	TCGA	3 cut(s)	192, 248, 518
TasI	AATT	6 cut(s)	180, 207, 266, 446, 558, 788
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	3 cut(s)	131, 250, 647
Tru1I	TTAA	2 cut(s)	807, 932
Tru9I	TTAA	2 cut(s)	807, 932
TscAI	CASTG	1 cut(s)	694
TseI	GCWGC	3 cut(s)	100, 323, 908
TspDTI	ATGAA	6 cut(s)	200, 228, 338, 536, 608, 756
TspRI	CASTG	1 cut(s)	694
XapI	RAATTY	4 cut(s)	207, 446, 558, 788
XceI	RCATGY	1 cut(s)	989
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.