Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

27696016 .. 27696353

Gene Structure 338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGCTGGGTTGGTGGTCAAGCTTCTGGTCAAGGATGGGACAAAGGTGGAAGGAGGACAGCCCATACTAGTTTTAGAGGCAATGAAGATGGAGCATGTTGTAAAGGCACCATCAGCAGGCTATGTCCACGGGCTTCATCTAGCAGCTGGCCAGCAGGTTTCTGATGGTGGTATTCTCTTCAGTATCAAGGTTAGCCGTTTGCTTTCTACTACCATCTGTATGAGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004485 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005840 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022626 GO:0031974 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2

Protein Analysis

77

Amino Acids

7.99

Weight (kDa)

8.89

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	3 - 62	5.5e-17	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	106
AcoI	YGGCCR	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	116
AhlI	ACTAGT	1 cut(s)	67
AluBI	AGCT	2 cut(s)	22, 146
AluI	AGCT	2 cut(s)	22, 146
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	5 cut(s)	29, 82, 118, 158, 221
BceAI	ACGGC	1 cut(s)	180
BcuI	ACTAGT	1 cut(s)	67
BfaI	CTAG	2 cut(s)	68, 140
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	1 cut(s)	150
BshNI	GGYRCC	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	108
BspMI	ACCTGC	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	182
BstC8I	GCNNGC	3 cut(s)	118, 148, 152
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	40
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	118, 148, 152
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	8 cut(s)	5, 22, 61, 120, 133, 146, 150, 195
CviKI_1	RGCY	8 cut(s)	5, 22, 61, 120, 133, 146, 150, 195
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	163
FaeI	CATG	1 cut(s)	98
FaiI	YATR	4 cut(s)	65, 96, 123, 221
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	68, 140
GluI	GCNGC	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	5 cut(s)	11, 102, 132, 140, 164
Lsp1109I	GCAGC	1 cut(s)	155
MaeI	CTAG	2 cut(s)	68, 140
MboII	GAAGA	2 cut(s)	97, 169
MlsI	TGGCCA	1 cut(s)	150
MluNI	TGGCCA	1 cut(s)	150
MnlI	CCTC	2 cut(s)	47, 70
Mox20I	TGGCCA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	113
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	108
NspI	RCATGY	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	108
PvuII	CAGCTG	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	218
SatI	GCNGC	1 cut(s)	144
SetI	ASST	5 cut(s)	24, 48, 148, 159, 192
SmiMI	CAYNNNNRTG	1 cut(s)	218
SpeI	ACTAGT	1 cut(s)	67
SspMI	CTAG	2 cut(s)	68, 140
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	98, 125
XceI	RCATGY	1 cut(s)	98
XspI	CTAG	2 cut(s)	68, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.