pycom11g25570

Phenazine biosynthesis-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
28348630 .. 28350073
1444 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 573 bp
ATGATGCGTGCAAATAGTGTTGAGCTTTGCGGCCATGCAACATTAGCTGCTTCATACACTCTCTTTAAGTCTGGTTTGACATATTCCGACATTATCGCGTTTTCAACTTTGTCTGGAATCCTAACTGCTAAAAAGGTTCTAGATGTTAAGACAGCCAATGGTGAAGCACAAGAATCCTCCTATTTCATTGAACTGCACTTTCCTGCTGCCCCGTCTAATGAATTCAACTCTGATGAGGCTGTGCTTCAATCAGCAAAAGTGGTTGCAGATTTACAGCCACAGCCTGATGCAATAAAAAAATGTCCGGGGTCTGGGGGAGTCCTTGCAACAGCGATTGCTTCCCCAGAGTCCGGAAAACTACAATTGATAAAAATCTGTATGCTGCTTCTTTGTTTATGTCAGGATCCTGTTTGTGGGAGCGCACATTGTGTCGTATCATCATACTTGTGCAGAAAACTTGGAAAATCTGATATTGTTGGATACGTGGCATCACATCGAGGAGGAAGATTATGCATTCATCTAGACAAGCAGAATCAAAGGGTGCTGCGTCAAGGGAAAGCGGTTACTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

191

Amino Acids

20.2

Weight (kDa)

8.56

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 7 - 79 5.2e-10 Phenazine biosynthesis-like protein
PhzC-PhzF PF02567 81 - 190 2e-13 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 98
AccIII TCCGGA 1 cut(s) 350
AciI CCGC 2 cut(s) 30, 560
AclWI GGATC 2 cut(s) 398, 411
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 221
AdeI CACNNNGTG 1 cut(s) 428
AfiI CCNNNNNNNGG 3 cut(s) 311, 350, 413
AgsI TTSAA 4 cut(s) 105, 191, 226, 248
AluBI AGCT 2 cut(s) 25, 47
AluI AGCT 2 cut(s) 25, 47
AlwI GGATC 2 cut(s) 398, 411
Aor13HI TCCGGA 1 cut(s) 350
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 4 cut(s) 47, 206, 382, 544
ApoI RAATTY 1 cut(s) 221
AspLEI GCGC 1 cut(s) 422
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 173
BamHI GGATCC 1 cut(s) 403
BbvI GCAGC 4 cut(s) 34, 193, 369, 531
BciVI GTATCC 1 cut(s) 473
BcnI CCSGG 1 cut(s) 306
BfaI CTAG 2 cut(s) 140, 521
BfuI GTATCC 1 cut(s) 473
BisI GCNGC 5 cut(s) 31, 48, 207, 383, 545
BlsI GCNGC 5 cut(s) 32, 49, 208, 384, 546
Bme1390I CCNGG 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 405
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 277, 497
BpuMI CCSGG 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 484
BsaBI GATNNNNATC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 350
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 350, 413
Bse8I GATNNNNATC 1 cut(s) 371
BseAI TCCGGA 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 305
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 3 cut(s) 311, 350, 413
BseRI GAGGAG 1 cut(s) 513
BseXI GCAGC 4 cut(s) 34, 193, 369, 531
BsgI GTGCAG 2 cut(s) 179, 469
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 305, 351
BslI CCNNNNNNNGG 3 cut(s) 311, 350, 413
BsmI GAATGC 1 cut(s) 513
BsnI GGCC 1 cut(s) 33
Bsp13I TCCGGA 1 cut(s) 350
Bsp143I GATC 1 cut(s) 403
BspACI CCGC 2 cut(s) 30, 560
BspANI GGCC 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 350
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 405
BspPI GGATC 2 cut(s) 398, 411
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 1 cut(s) 403
Bst4CI ACNGT 1 cut(s) 568
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 9
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 304
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 4 cut(s) 34, 193, 369, 531
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 422
CseI GACGC 1 cut(s) 536
CviAII CATG 1 cut(s) 35
CviJI RGCY 7 cut(s) 25, 33, 47, 155, 239, 277, 283
CviKI_1 RGCY 7 cut(s) 25, 33, 47, 155, 239, 277, 283
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
DraIII CACNNNGTG 1 cut(s) 428
EaeI YGGCCR 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 515
FaeI CATG 1 cut(s) 38
FaiI YATR 7 cut(s) 36, 55, 82, 380, 397, 442, 511
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 5 cut(s) 31, 48, 207, 383, 545
Fsp4HI GCNGC 5 cut(s) 31, 48, 207, 383, 545
FspBI CTAG 2 cut(s) 140, 521
GlaI GCGC 1 cut(s) 421
GluI GCNGC 5 cut(s) 31, 48, 207, 383, 545
HaeIII GGCC 1 cut(s) 33
HapII CCGG 2 cut(s) 305, 351
HgaI GACGC 1 cut(s) 536
HhaI GCGC 1 cut(s) 422
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HinfI GANTC 5 cut(s) 117, 173, 318, 347, 532
HpaII CCGG 2 cut(s) 305, 351
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 3 cut(s) 88, 232, 469
Hpy188III TCNNGA 5 cut(s) 114, 140, 351, 401, 521
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 8 cut(s) 11, 38, 196, 266, 290, 326, 450, 513
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 1 cut(s) 420
Kpn2I TCCGGA 1 cut(s) 350
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 1 cut(s) 417
Lsp1109I GCAGC 4 cut(s) 34, 193, 369, 531
LweI GCATC 2 cut(s) 277, 497
MaeI CTAG 2 cut(s) 140, 521
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 1 cut(s) 562
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 1 cut(s) 516
MfeI CAATTG 1 cut(s) 362
MflI RGATCY 1 cut(s) 403
MluCI AATT 2 cut(s) 221, 362
MlyI GAGTC 2 cut(s) 327, 356
MmeI TCCRAC 2 cut(s) 111, 457
MnlI CCTC 4 cut(s) 187, 229, 491, 494
Mph1103I ATGCAT 1 cut(s) 515
MroI TCCGGA 1 cut(s) 350
MseI TTAA 2 cut(s) 66, 147
MslI CAYNNNNRTG 1 cut(s) 445
MspI CCGG 2 cut(s) 305, 351
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 513
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 306
NdeII GATC 1 cut(s) 403
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 405
NsiI ATGCAT 1 cut(s) 515
PctI GAATGC 1 cut(s) 513
PfeI GAWTC 3 cut(s) 117, 173, 532
PkrI GCNGC 5 cut(s) 32, 49, 208, 384, 546
PleI GAGTC 2 cut(s) 326, 355
PpsI GAGTC 2 cut(s) 326, 355
Ppu21I YACGTR 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 405
PsuI RGATCY 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 445
SaqAI TTAA 2 cut(s) 66, 147
SatI GCNGC 5 cut(s) 31, 48, 207, 383, 545
Sau3AI GATC 1 cut(s) 403
SchI GAGTC 2 cut(s) 327, 356
ScrFI CCNGG 1 cut(s) 306
SetI ASST 4 cut(s) 27, 49, 138, 486
SfaNI GCATC 2 cut(s) 277, 497
SmiMI CAYNNNNRTG 1 cut(s) 445
Sse9I AATT 2 cut(s) 221, 362
SsiI CCGC 2 cut(s) 30, 560
SspMI CTAG 2 cut(s) 140, 521
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 568
TaiI ACGT 1 cut(s) 486
TaqI TCGA 1 cut(s) 496
TasI AATT 2 cut(s) 221, 362
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 3 cut(s) 117, 173, 532
Tru1I TTAA 2 cut(s) 66, 147
Tru9I TTAA 2 cut(s) 66, 147
TseI GCWGC 4 cut(s) 47, 206, 382, 544
TspDTI ATGAA 4 cut(s) 42, 175, 234, 506
XapI RAATTY 1 cut(s) 221
XbaI TCTAGA 2 cut(s) 139, 520
XspI CTAG 2 cut(s) 140, 521
Zsp2I ATGCAT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.