pycom11g25800

Mitochondrial ubiquitin ligase activator of NFKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
28504452 .. 28506471
2020 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 780 bp
ATGAACAGACTCGAATGTGAGACAAAGAGAAGCGTCGAATGTGAGAGAATAGATGACCGTGAAGGCATCAAGTTACTGGGAGTCCAGAGAACTGAGCGTGTACTTCCAATTGGTATTTCTCTGAGTGTTGTTGGTGAGGCCGTCAAAGACGACGTTGGTACCATTCGCATTCAAAAACCCCACGAAGGGCCATTTTATGTCTCCACCAAATCCATCGACGAGCTCATTGCGAGCCATAAGAACTGGGCAAGGTTTTTGAAATGTGCATCTTTTGGTGTGGCTGTGATCGGTCTTACTTTGATTGCCGCTGAACTTGATAAGTACATCAGGGAAAGACTGCGCCGCTCCGAATGGCTGAGAAGCAGGAGAAGGGCTGTTGGTGCAGATGATATAAGATATCGGGAAAATAATATAGCTTCATACGAAAGGGCGGCTGCTGCTGTAGCTGATATAAGATCTCGGATAAATAATATAGCTTCATACGAAAGGGCGGCTGCTGCTGTAGCTGGTATAAGATCTCGGCAACATAATGCAGGTTCATCAGACACAAGGGCCGTTGCTGCAGTTTATATAAGATCACAAAGAGATAATGCAGGCGAAAGGGCTGCTGCTGCACCAGACGGGGCCAGTTCATGTGTGATATGCCTTGAGCGGCAGTACAATGTTGTTTTCATCCCGTGTGGCCATATGTGCTGTTGTACAACTTGCTGCTCGCAGCTGACCGAATGTCCCCTCTGCCGGCAACCATTTTCTCAGGCGGTGAGGACATTCCGCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GIDE zf-C3HC4_3

Protein Analysis

260

Amino Acids

28.79

Weight (kDa)

9.1

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIDE PF12483 25 - 99 2.8e-22 E3 Ubiquitin ligase
zf-C3HC4_3 PF13920 210 - 252 5.8e-14 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 524
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 158
AccBSI CCGCTC 2 cut(s) 345, 652
AciI CCGC 7 cut(s) 306, 343, 431, 491, 652, 758, 772
AcoI YGGCCR 1 cut(s) 682
AfaI GTAC 5 cut(s) 102, 160, 323, 659, 700
AfiI CCNNNNNNNGG 3 cut(s) 185, 186, 738
AgsI TTSAA 2 cut(s) 173, 259
AhdI GACNNNNNGTC 1 cut(s) 726
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 6 cut(s) 223, 416, 446, 476, 506, 718
AluI AGCT 6 cut(s) 223, 416, 446, 476, 506, 718
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 2 cut(s) 14, 205
AoxI GGCC 5 cut(s) 138, 188, 552, 624, 682
Asp718I GGTACC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 3 cut(s) 188, 552, 624
AsuHPI GGTGA 2 cut(s) 146, 772
BaeI ACNNNNGTAYC 2 cut(s) 142, 175
BalI TGGCCA 1 cut(s) 684
BanI GGYRCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BccI CCATC 1 cut(s) 221
BceAI ACGGC 2 cut(s) 125, 539
BcgI CGANNNNNNTGC 4 cut(s) 209, 243, 587, 621
BcoDI GTCTC 2 cut(s) 14, 205
BfmI CTRYAG 3 cut(s) 441, 501, 561
BfuAI ACCTGC 1 cut(s) 524
BglII AGATCT 2 cut(s) 455, 515
BmeRI GACNNNNNGTC 1 cut(s) 726
BmgT120I GGNCC 3 cut(s) 188, 552, 624
BmiI GGNNCC 2 cut(s) 160, 625
BmrI ACTGGG 2 cut(s) 86, 253
BmsI GCATC 2 cut(s) 75, 275
BmuI ACTGGG 2 cut(s) 86, 253
BpuEI CTTGAG 1 cut(s) 668
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 186, 738
Bse118I RCCGGY 1 cut(s) 738
Bse1I ACTGG 3 cut(s) 81, 248, 627
Bse3DI GCAATG 1 cut(s) 225
BseGI GGATG 1 cut(s) 672
BseLI CCNNNNNNNGG 3 cut(s) 185, 186, 738
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 4 cut(s) 84, 113, 347, 767
BseNI ACTGG 3 cut(s) 81, 248, 627
BsgI GTGCAG 2 cut(s) 402, 597
BshFI GGCC 5 cut(s) 140, 190, 554, 626, 684
BshNI GGYRCC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 1 cut(s) 739
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 3 cut(s) 185, 186, 738
BsmAI GTCTC 2 cut(s) 14, 205
BsmFI GGGAC 1 cut(s) 714
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 5 cut(s) 140, 190, 554, 626, 684
Bsp1286I GDGCHC 1 cut(s) 225
Bsp1407I TGTACA 1 cut(s) 698
Bsp143I GATC 4 cut(s) 285, 455, 515, 575
BspACI CCGC 7 cut(s) 306, 343, 431, 491, 652, 758, 772
BspANI GGCC 5 cut(s) 140, 190, 554, 626, 684
BspCNI CTCAG 4 cut(s) 85, 114, 348, 766
BspLI GGNNCC 2 cut(s) 160, 625
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 158
BsrBI CCGCTC 2 cut(s) 345, 652
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 738
BsrGI TGTACA 1 cut(s) 698
BsrI ACTGG 3 cut(s) 81, 248, 627
BssAI RCCGGY 1 cut(s) 738
BssMI GATC 4 cut(s) 285, 455, 515, 575
Bst4CI ACNGT 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 698
BstC8I GCNNGC 4 cut(s) 232, 595, 713, 740
BstDEI CTNAG 4 cut(s) 93, 122, 356, 753
BstF5I GGATG 1 cut(s) 672
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 4 cut(s) 288, 458, 518, 578
BstMAI GTCTC 2 cut(s) 14, 205
BstMBI GATC 4 cut(s) 285, 455, 515, 575
BstMWI GCNNNNNNNGC 8 cut(s) 380, 437, 443, 497, 503, 560, 611, 690
BstSFI CTRYAG 3 cut(s) 441, 501, 561
BstX2I RGATCY 2 cut(s) 455, 515
BstYI RGATCY 2 cut(s) 455, 515
BsuRI GGCC 5 cut(s) 140, 190, 554, 626, 684
BtsCI GGATG 1 cut(s) 672
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 4 cut(s) 232, 595, 713, 740
CfoI GCGC 1 cut(s) 342
Cfr10I RCCGGY 1 cut(s) 738
Cfr13I GGNCC 3 cut(s) 188, 552, 624
CseI GACGC 1 cut(s) 22
Csp6I GTAC 5 cut(s) 101, 159, 322, 658, 699
CviAII CATG 1 cut(s) 633
CviQI GTAC 5 cut(s) 101, 159, 322, 658, 699
DdeI CTNAG 4 cut(s) 93, 122, 356, 753
DpnI GATC 4 cut(s) 287, 457, 517, 577
DpnII GATC 4 cut(s) 285, 455, 515, 575
DriI GACNNNNNGTC 1 cut(s) 726
EaeI YGGCCR 1 cut(s) 682
Eam1105I GACNNNNNGTC 1 cut(s) 726
EciI GGCGGA 1 cut(s) 761
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 223
EcoRV GATATC 1 cut(s) 398
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 1 cut(s) 636
FaqI GGGAC 1 cut(s) 714
FatI CATG 1 cut(s) 632
FauNDI CATATG 1 cut(s) 687
FokI GGATG 1 cut(s) 659
FriOI GRGCYC 1 cut(s) 225
GlaI GCGC 1 cut(s) 341
HaeIII GGCC 5 cut(s) 140, 190, 554, 626, 684
HapII CCGG 1 cut(s) 739
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 342
Hin1II CATG 1 cut(s) 636
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HinfI GANTC 2 cut(s) 9, 81
HpaII CCGG 1 cut(s) 739
HphI GGTGA 2 cut(s) 146, 772
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 4 cut(s) 123, 349, 462, 544
Hpy188III TCNNGA 2 cut(s) 85, 401
Hpy8I GTNNAC 1 cut(s) 101
Hpy99I CGWCG 3 cut(s) 38, 155, 221
HpyAV CCTTC 3 cut(s) 56, 179, 363
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 6 cut(s) 266, 383, 533, 563, 593, 614
HpyF10VI GCNNNNNNNGC 8 cut(s) 380, 437, 443, 497, 503, 560, 611, 690
HpyF3I CTNAG 4 cut(s) 93, 122, 356, 753
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 636
HspAI GCGC 1 cut(s) 340
KpnI GGTACC 1 cut(s) 162
KroI GCCGGC 1 cut(s) 738
KroNI GCCGGC 1 cut(s) 740
Kzo9I GATC 4 cut(s) 285, 455, 515, 575
LmnI GCTCC 1 cut(s) 350
LweI GCATC 2 cut(s) 75, 275
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 72
MalI GATC 4 cut(s) 287, 457, 517, 577
MbiI CCGCTC 2 cut(s) 345, 652
MboI GATC 4 cut(s) 285, 455, 515, 575
MfeI CAATTG 1 cut(s) 108
MflI RGATCY 2 cut(s) 455, 515
MhlI GDGCHC 1 cut(s) 225
MlsI TGGCCA 1 cut(s) 684
MluCI AATT 1 cut(s) 108
MluNI TGGCCA 1 cut(s) 684
MlyI GAGTC 2 cut(s) 3, 90
MnlI CCTC 3 cut(s) 130, 743, 756
Mox20I TGGCCA 1 cut(s) 684
MroNI GCCGGC 1 cut(s) 738
MscI TGGCCA 1 cut(s) 684
Msp20I TGGCCA 1 cut(s) 684
MspA1I CMGCKG 2 cut(s) 308, 718
MspI CCGG 1 cut(s) 739
MunI CAATTG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 168
MwoI GCNNNNNNNGC 8 cut(s) 380, 437, 443, 497, 503, 560, 611, 690
NaeI GCCGGC 1 cut(s) 740
NdeI CATATG 1 cut(s) 687
NdeII GATC 4 cut(s) 285, 455, 515, 575
NgoMIV GCCGGC 1 cut(s) 738
NlaIII CATG 1 cut(s) 636
NlaIV GGNNCC 2 cut(s) 160, 625
NmeAIII GCCGAG 1 cut(s) 499
PctI GAATGC 1 cut(s) 168
PdiI GCCGGC 1 cut(s) 740
PleI GAGTC 2 cut(s) 3, 89
PpsI GAGTC 2 cut(s) 3, 89
Psp124BI GAGCTC 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 160, 625
PspPI GGNCC 3 cut(s) 188, 552, 624
PstI CTGCAG 1 cut(s) 565
PsuI RGATCY 2 cut(s) 455, 515
PvuII CAGCTG 1 cut(s) 718
RsaI GTAC 5 cut(s) 102, 160, 323, 659, 700
RsaNI GTAC 5 cut(s) 101, 159, 322, 658, 699
SacI GAGCTC 1 cut(s) 225
Sau3AI GATC 4 cut(s) 285, 455, 515, 575
Sau96I GGNCC 3 cut(s) 188, 552, 624
SchI GAGTC 2 cut(s) 3, 90
SduI GDGCHC 1 cut(s) 225
SetI ASST 9 cut(s) 156, 225, 254, 418, 448, 478, 508, 538, 720
SfaNI GCATC 2 cut(s) 75, 275
SfcI CTRYAG 3 cut(s) 441, 501, 561
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 1 cut(s) 108
SsiI CCGC 7 cut(s) 306, 343, 431, 491, 652, 758, 772
SstI GAGCTC 1 cut(s) 225
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 1 cut(s) 156
TaqI TCGA 3 cut(s) 12, 36, 216
TaqII GACCGA 2 cut(s) 278, 737
TasI AATT 1 cut(s) 108
TatI WGTACW 4 cut(s) 100, 321, 657, 698
TauI GCSGC 5 cut(s) 308, 345, 434, 494, 655
TspDTI ATGAA 6 cut(s) 17, 408, 468, 528, 621, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.