Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

28719900 .. 28721210

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACTCATGCAAGAAAATGTGCAGGTGAGCAAAACTCAGACTGGGTTAGTAAAAGTGGCCAGGCCAGCGTGATGGGGTTTTACAGGGGCCTAGCACAGGTACAATGGGTTTCTCAAAGCAAACCAAAGCTCACCGTTTTGGAGGAACAGTTTCGAAACTTTGAGCCATCGACGCACCTTCCAAGTTTCCCTCGTCCTAAAAATTTTCCCTCTTTTTCCAATTCCGCCAAAAATCAAATTTCCACGCTGGCGATCCTATCACACACCTTCAAGCCCCACGCCGGTCGCACCGTCGCTTTGCCTCTCGATTTTTCGCCGCTAGGGTTGCAGATTCCGGTCCGAATTTCAAAATTCGATATGAGTTCTCCGACCTCCAAAGGCGGCAGAGGCAAGCCCAAGGCGTCCAAATCCGTCTCCCGATCTTCCAAGGCCGGCCTCCAGTTCCCCGTCGGTCGTATCGCTCGGTTCCTCAAGGCCGGCAAGTACGCCGAGCGTGTGGGCGCTGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTATCTCGCTGCTGAGGTGCTTGAGCTTGCTGGAAATGCAGCCAGAGACAACAAGAAGAACCGAATTGTCCCGAGGCACATTCAGCTGGCTGTGCGAAACGACGAGGAGCTGAGCAAGCTTTTGGGAGCTGTCACGATCGCAAACGGCGGTGTTATGCCCAACATCCATCAGAATCTGCTGCCGAAGAAGGTTGGGAAAGGGAAAGGCGAAATTGGATCCGCCTCACAAGAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

258

Amino Acids

27.82

Weight (kDa)

10.33

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	132 - 211	8e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	214 - 247	7.9e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	506
AccI	GTMKAC	1 cut(s)	516
AciI	CCGC	6 cut(s)	225, 317, 381, 525, 684, 756
AclWI	GGATC	3 cut(s)	247, 747, 760
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	5 cut(s)	202, 237, 342, 350, 767
AcyI	GRCGYC	2 cut(s)	401, 507
AfaI	GTAC	2 cut(s)	102, 485
AfiI	CCNNNNNNNGG	2 cut(s)	97, 281
AgsI	TTSAA	2 cut(s)	271, 348
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	6 cut(s)	130, 562, 622, 646, 655, 665
AluI	AGCT	6 cut(s)	130, 562, 622, 646, 655, 665
Alw26I	GTCTC	2 cut(s)	418, 576
AlwI	GGATC	3 cut(s)	247, 747, 760
AlwNI	CAGNNNCTG	1 cut(s)	712
Ama87I	CYCGRG	2 cut(s)	533, 607
AoxI	GGCC	6 cut(s)	58, 63, 88, 429, 433, 474
ApeKI	GCWGC	3 cut(s)	545, 575, 715
ApoI	RAATTY	5 cut(s)	202, 237, 342, 350, 767
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	503, 509
AspS9I	GGNCC	2 cut(s)	88, 337
AsuHPI	GGTGA	2 cut(s)	38, 124
AsuII	TTCGAA	1 cut(s)	154
AvaI	CYCGRG	2 cut(s)	533, 607
AvaII	GGWCC	1 cut(s)	337
BalI	TGGCCA	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	506
BbvCI	CCTCAGC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	532, 587, 702
BccI	CCATC	3 cut(s)	67, 175, 711
BceAI	ACGGC	2 cut(s)	512, 697
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	418, 576
BfaI	CTAG	2 cut(s)	92, 320
BfoI	RGCGCY	2 cut(s)	504, 510
BfuAI	ACCTGC	1 cut(s)	14
BisI	GCNGC	5 cut(s)	317, 382, 546, 576, 716
BlpI	GCTNAGC	1 cut(s)	647
BlsI	GCNGC	5 cut(s)	318, 383, 547, 577, 717
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	2 cut(s)	533, 607
BmgT120I	GGNCC	2 cut(s)	88, 337
BmiI	GGNNCC	4 cut(s)	89, 467, 508, 754
BmrFI	CCNGG	1 cut(s)	62
BmrI	ACTGGG	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	52
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	549
Bpu1102I	GCTNAGC	1 cut(s)	647
Bpu14I	TTCGAA	1 cut(s)	154
BpuEI	CTTGAG	2 cut(s)	455, 578
BsaHI	GRCGYC	2 cut(s)	401, 507
BsaJI	CCNNGG	3 cut(s)	396, 426, 608
BsaWI	WCCGGW	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 281
Bse118I	RCCGGY	3 cut(s)	281, 431, 476
Bse1I	ACTGG	2 cut(s)	47, 439
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	396, 426, 608
BseGI	GGATG	1 cut(s)	699
BseLI	CCNNNNNNNGG	2 cut(s)	97, 281
BseMII	CTCAG	3 cut(s)	51, 540, 638
BseNI	ACTGG	2 cut(s)	47, 439
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	3 cut(s)	532, 587, 702
BsgI	GTGCAG	1 cut(s)	42
Bsh1285I	CGRYCG	3 cut(s)	286, 454, 675
BshFI	GGCC	6 cut(s)	60, 65, 90, 431, 435, 476
BshNI	GGYRCC	1 cut(s)	506
BsiEI	CGRYCG	3 cut(s)	286, 454, 675
BsiHKCI	CYCGRG	2 cut(s)	533, 607
BsiSI	CCGG	4 cut(s)	282, 335, 432, 477
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	2 cut(s)	97, 281
BsmAI	GTCTC	2 cut(s)	418, 576
BsmBI	CGTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	590
BsnI	GGCC	6 cut(s)	60, 65, 90, 431, 435, 476
BsoBI	CYCGRG	2 cut(s)	533, 607
Bsp119I	TTCGAA	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	252, 419, 672, 752
Bsp1720I	GCTNAGC	1 cut(s)	647
BspACI	CCGC	6 cut(s)	225, 317, 381, 525, 684, 756
BspANI	GGCC	6 cut(s)	60, 65, 90, 431, 435, 476
BspCNI	CTCAG	3 cut(s)	50, 541, 639
BspLI	GGNNCC	4 cut(s)	89, 467, 508, 754
BspMI	ACCTGC	1 cut(s)	14
BspPI	GGATC	3 cut(s)	247, 747, 760
BspT104I	TTCGAA	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	506
BsrFI	RCCGGY	3 cut(s)	281, 431, 476
BsrI	ACTGG	2 cut(s)	47, 439
BssAI	RCCGGY	3 cut(s)	281, 431, 476
BssECI	CCNNGG	3 cut(s)	396, 426, 608
BssMI	GATC	4 cut(s)	252, 419, 672, 752
BssNI	GRCGYC	2 cut(s)	401, 507
BssT1I	CCWWGG	2 cut(s)	396, 426
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	136, 150, 292
BstACI	GRCGYC	2 cut(s)	401, 507
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	9 cut(s)	67, 249, 392, 433, 478, 505, 564, 624, 653
BstDEI	CTNAG	3 cut(s)	37, 549, 647
BstENI	CCTNNNNNAGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	699
BstH2I	RGCGCY	2 cut(s)	504, 510
BstHHI	GCGC	2 cut(s)	503, 509
BstKTI	GATC	4 cut(s)	255, 422, 675, 755
BstMAI	GTCTC	2 cut(s)	418, 576
BstMBI	GATC	4 cut(s)	252, 419, 672, 752
BstMCI	CGRYCG	3 cut(s)	286, 454, 675
BstMWI	GCNNNNNNNGC	8 cut(s)	66, 172, 325, 387, 572, 619, 628, 652
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	532, 587, 702
BstX2I	RGATCY	1 cut(s)	752
BstXI	CCANNNNNNTGG	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	752
BsuRI	GGCC	6 cut(s)	60, 65, 90, 431, 435, 476
BtsCI	GGATG	1 cut(s)	699
BveI	ACCTGC	1 cut(s)	14
Cac8I	GCNNGC	9 cut(s)	67, 249, 392, 433, 478, 505, 564, 624, 653
CaiI	CAGNNNCTG	1 cut(s)	712
CfoI	GCGC	2 cut(s)	503, 509
Cfr10I	RCCGGY	3 cut(s)	281, 431, 476
Cfr13I	GGNCC	2 cut(s)	88, 337
CpoI	CGGWCCG	1 cut(s)	337
CseI	GACGC	2 cut(s)	181, 390
Csp6I	GTAC	2 cut(s)	101, 484
CspI	CGGWCCG	1 cut(s)	337
CviAII	CATG	1 cut(s)	8
CviQI	GTAC	2 cut(s)	101, 484
DdeI	CTNAG	3 cut(s)	37, 549, 647
DinI	GGCGCC	1 cut(s)	508
DpnI	GATC	4 cut(s)	254, 421, 674, 754
DpnII	GATC	4 cut(s)	252, 419, 672, 752
EaeI	YGGCCR	1 cut(s)	58
EciI	GGCGGA	3 cut(s)	214, 514, 745
Eco130I	CCWWGG	2 cut(s)	396, 426
Eco47I	GGWCC	1 cut(s)	337
Eco88I	CYCGRG	2 cut(s)	533, 607
EcoNI	CCTNNNNNAGG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	396, 426
EgeI	GGCGCC	1 cut(s)	508
EheI	GGCGCC	1 cut(s)	508
ErhI	CCWWGG	2 cut(s)	396, 426
Esp3I	CGTCTC	1 cut(s)	418
FaeI	CATG	1 cut(s)	11
FaiI	YATR	3 cut(s)	9, 359, 692
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	5 cut(s)	317, 382, 546, 576, 716
FokI	GGATG	1 cut(s)	686
FseI	GGCCGGCC	1 cut(s)	435
Fsp4HI	GCNGC	5 cut(s)	317, 382, 546, 576, 716
FspBI	CTAG	2 cut(s)	92, 320
GlaI	GCGC	2 cut(s)	502, 508
GluI	GCNGC	5 cut(s)	317, 382, 546, 576, 716
GsuI	CTGGAG	1 cut(s)	422
HaeII	RGCGCY	2 cut(s)	504, 510
HaeIII	GGCC	6 cut(s)	60, 65, 90, 431, 435, 476
HapII	CCGG	4 cut(s)	282, 335, 432, 477
HgaI	GACGC	2 cut(s)	181, 390
HhaI	GCGC	2 cut(s)	503, 509
Hin1I	GRCGYC	2 cut(s)	401, 507
Hin1II	CATG	1 cut(s)	11
Hin6I	GCGC	2 cut(s)	501, 507
HinP1I	GCGC	2 cut(s)	501, 507
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	3 cut(s)	4, 331, 709
HpaII	CCGG	4 cut(s)	282, 335, 432, 477
HphI	GGTGA	2 cut(s)	38, 124
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	4 cut(s)	40, 341, 369, 708
Hpy188III	TCNNGA	4 cut(s)	305, 417, 607, 670
Hpy8I	GTNNAC	1 cut(s)	517
Hpy99I	CGWCG	4 cut(s)	175, 296, 452, 641
HpyAV	CCTTC	3 cut(s)	188, 277, 718
HpyCH4III	ACNGT	3 cut(s)	136, 150, 292
HpyCH4V	TGCA	4 cut(s)	11, 23, 328, 575
HpyF10VI	GCNNNNNNNGC	8 cut(s)	66, 172, 325, 387, 572, 619, 628, 652
HpyF3I	CTNAG	3 cut(s)	37, 549, 647
Hsp92I	GRCGYC	2 cut(s)	401, 507
Hsp92II	CATG	1 cut(s)	11
HspAI	GCGC	2 cut(s)	501, 507
KasI	GGCGCC	1 cut(s)	506
KroI	GCCGGC	2 cut(s)	431, 476
KroNI	GCCGGC	2 cut(s)	433, 478
Kzo9I	GATC	4 cut(s)	252, 419, 672, 752
LmnI	GCTCC	2 cut(s)	643, 662
Lsp1109I	GCAGC	3 cut(s)	532, 587, 702
MaeI	CTAG	2 cut(s)	92, 320
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	4 cut(s)	254, 421, 674, 754
MboI	GATC	4 cut(s)	252, 419, 672, 752
MboII	GAAGA	3 cut(s)	414, 604, 733
MflI	RGATCY	1 cut(s)	752
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	8 cut(s)	202, 220, 237, 342, 350, 600, 747, 767
MluNI	TGGCCA	1 cut(s)	60
Mly113I	GGCGCC	1 cut(s)	507
MmeI	TCCRAC	1 cut(s)	392
Mox20I	TGGCCA	1 cut(s)	60
MroNI	GCCGGC	2 cut(s)	431, 476
MroXI	GAANNNNTTC	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	622
MspI	CCGG	4 cut(s)	282, 335, 432, 477
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	8 cut(s)	66, 172, 325, 387, 572, 619, 628, 652
NaeI	GCCGGC	2 cut(s)	433, 478
NarI	GGCGCC	1 cut(s)	507
NdeII	GATC	4 cut(s)	252, 419, 672, 752
NgoMIV	GCCGGC	2 cut(s)	431, 476
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	4 cut(s)	89, 467, 508, 754
NmeAIII	GCCGAG	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	667
NspV	TTCGAA	1 cut(s)	154
PaeR7I	CTCGAG	1 cut(s)	533
PaqCI	CACCTGC	1 cut(s)	14
PdiI	GCCGGC	2 cut(s)	433, 478
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	331, 709
PkrI	GCNGC	5 cut(s)	318, 383, 547, 577, 717
Ple19I	CGATCG	1 cut(s)	675
PluTI	GGCGCC	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	4 cut(s)	89, 467, 508, 754
PspPI	GGNCC	2 cut(s)	88, 337
PspXI	VCTCGAGB	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	752
PvuI	CGATCG	1 cut(s)	675
PvuII	CAGCTG	1 cut(s)	622
RigI	GGCCGGCC	1 cut(s)	435
RsaI	GTAC	2 cut(s)	102, 485
RsaNI	GTAC	2 cut(s)	101, 484
Rsr2I	CGGWCCG	1 cut(s)	337
RsrII	CGGWCCG	1 cut(s)	337
SatI	GCNGC	5 cut(s)	317, 382, 546, 576, 716
Sau3AI	GATC	4 cut(s)	252, 419, 672, 752
Sau96I	GGNCC	2 cut(s)	88, 337
ScrFI	CCNGG	1 cut(s)	62
SfoI	GGCGCC	1 cut(s)	508
Sfr274I	CTCGAG	1 cut(s)	533
SfuI	TTCGAA	1 cut(s)	154
SinI	GGWCC	1 cut(s)	337
SlaI	CTCGAG	1 cut(s)	533
SmlI	CTYRAG	3 cut(s)	470, 533, 557
SmoI	CTYRAG	3 cut(s)	470, 533, 557
Sse9I	AATT	8 cut(s)	202, 220, 237, 342, 350, 600, 747, 767
SsiI	CCGC	6 cut(s)	225, 317, 381, 525, 684, 756
SspDI	GGCGCC	1 cut(s)	506
SspMI	CTAG	2 cut(s)	92, 320
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	396, 426
TaaI	ACNGT	3 cut(s)	136, 150, 292
TaqI	TCGA	5 cut(s)	154, 170, 306, 354, 534
TaqII	GACCGA	1 cut(s)	440
TasI	AATT	8 cut(s)	202, 220, 237, 342, 350, 600, 747, 767
TauI	GCSGC	2 cut(s)	319, 384
TfiI	GAWTC	2 cut(s)	331, 709
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	3 cut(s)	545, 575, 715
Tsp45I	GTSAC	1 cut(s)	667
TspGWI	ACGGA	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	337
XagI	CCTNNNNNAGG	1 cut(s)	95
XapI	RAATTY	5 cut(s)	202, 237, 342, 350, 767
XhoI	CTCGAG	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	516
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	2 cut(s)	92, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.