Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

29074954 .. 29075658

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTGCTCAAGCTGCATGGACTTTCTGTGTCGACCTGCACAGCTCGCGTCGTCGCTTGTCTCCACGAAAAAAGCGTTGATTTCGAGCTTGTCCCCGTTGATCTTTTCGCCCGCGGAAACAAGCAGCCTGAGTTTCTTGCCAAGAATCCCTTTGGCCTGGTTCCAGTATTAGAAGACGATGGCATCACACTTTTCGAATCTAGGGCAATCACAGCATATGTAGCAGAAAAATTCAAGGAAACGGGACACGATCTCGTTCGTCGCGAAAACTTCAACGAAGCTGCATTGGTGAAGGTATGGACAGAAGTGGAATCCCAACAATACAACCCTGCAATGGAACCGATTATTTTCGAGTTTTTCGCAAAGCCTGTGGTAGGAATCGAACCAGATCAAACGGTCGATCGATGCAAGTTTAGAGAAGCTGAAGAAGGTGCTCGACGTGTACGAGGCCAGATTGAGCAGCAACGAGTTCCTTGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009635 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0032991 GO:0034641 GO:0042221 GO:0042802 GO:0042803 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046983 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

161

Amino Acids

18.21

Weight (kDa)

5.31

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 76	1.7e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	5 - 80	1.8e-14	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	11 - 76	1.8e-14	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	3 cut(s)	48, 114, 264
AciI	CCGC	2 cut(s)	112, 114
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	2 cut(s)	334, 374
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	235, 274
AjiI	CACGTC	1 cut(s)	440
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	5 cut(s)	13, 44, 88, 281, 422
AluI	AGCT	5 cut(s)	13, 44, 88, 281, 422
Alw21I	GWGCWC	2 cut(s)	9, 436
Alw26I	GTCTC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	154, 448
ApeKI	GCWGC	4 cut(s)	13, 124, 281, 460
ApoI	RAATTY	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	301
AsuII	TTCGAA	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	2 cut(s)	9, 436
BbvI	GCAGC	3 cut(s)	136, 268, 472
BccI	CCATC	1 cut(s)	173
BcgI	CGANNNNNNTGC	1 cut(s)	456
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	44
BisI	GCNGC	4 cut(s)	14, 125, 282, 461
BlsI	GCNGC	4 cut(s)	15, 126, 283, 462
Bme1390I	CCNGG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	162, 339
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	2 cut(s)	192, 395
BpiI	GAAGAC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	195
Bsa29I	ATCGAT	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 374
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	158
BseCI	ATCGAT	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	112
BseLI	CCNNNNNNNGG	2 cut(s)	334, 374
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	3 cut(s)	136, 268, 472
BsgI	GTGCAG	1 cut(s)	22
Bsh1236I	CGCG	3 cut(s)	48, 114, 264
Bsh1285I	CGRYCG	2 cut(s)	399, 403
BshFI	GGCC	2 cut(s)	156, 450
BshVI	ATCGAT	1 cut(s)	403
BsiEI	CGRYCG	2 cut(s)	399, 403
BsiHKAI	GWGCWC	2 cut(s)	9, 436
BslFI	GGGAC	2 cut(s)	77, 258
BslI	CCNNNNNNNGG	2 cut(s)	334, 374
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	77, 258
BsnI	GGCC	2 cut(s)	156, 450
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	9, 436
Bsp143I	GATC	4 cut(s)	100, 250, 388, 400
Bsp68I	TCGCGA	1 cut(s)	264
BspACI	CCGC	2 cut(s)	112, 114
BspANI	GGCC	2 cut(s)	156, 450
BspCNI	CTCAG	1 cut(s)	121
BspDI	ATCGAT	1 cut(s)	403
BspFNI	CGCG	3 cut(s)	48, 114, 264
BspLI	GGNNCC	2 cut(s)	162, 339
BspMI	ACCTGC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	4 cut(s)	100, 250, 388, 400
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	397
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	46, 112
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	112
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstFNI	CGCG	3 cut(s)	48, 114, 264
BstKTI	GATC	4 cut(s)	103, 253, 391, 403
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	4 cut(s)	100, 250, 388, 400
BstMCI	CGRYCG	2 cut(s)	399, 403
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 45, 212, 221
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	3 cut(s)	48, 114, 264
BstV1I	GCAGC	3 cut(s)	136, 268, 472
BstV2I	GAAGAC	1 cut(s)	180
Bsu15I	ATCGAT	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	156, 450
BsuTUI	ATCGAT	1 cut(s)	403
BtgI	CCRYGG	1 cut(s)	112
BtrI	CACGTC	1 cut(s)	440
BtuMI	TCGCGA	1 cut(s)	264
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	2 cut(s)	46, 112
Cfr42I	CCGCGG	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	403
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	443
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	9 cut(s)	13, 44, 88, 127, 156, 281, 367, 422, 450
CviKI_1	RGCY	9 cut(s)	13, 44, 88, 127, 156, 281, 367, 422, 450
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	4 cut(s)	102, 252, 390, 402
DpnII	GATC	4 cut(s)	100, 250, 388, 400
Eco57I	CTGAAG	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	20
FaiI	YATR	4 cut(s)	18, 217, 219, 298
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	2 cut(s)	77, 258
FatI	CATG	1 cut(s)	16
FauI	CCCGC	1 cut(s)	119
FauNDI	CATATG	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	4 cut(s)	14, 125, 282, 461
Fsp4HI	GCNGC	4 cut(s)	14, 125, 282, 461
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	4 cut(s)	14, 125, 282, 461
HaeIII	GGCC	2 cut(s)	156, 450
HgaI	GACGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	4 cut(s)	145, 197, 311, 378
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	2 cut(s)	33, 443
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	33, 443
Hpy99I	CGWCG	4 cut(s)	53, 56, 264, 441
HpyAV	CCTTC	2 cut(s)	286, 422
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	5 cut(s)	16, 39, 284, 332, 408
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 45, 212, 221
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	1 cut(s)	20
KspI	CCGCGG	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	100, 250, 388, 400
Lsp1109I	GCAGC	3 cut(s)	136, 268, 472
LweI	GCATC	2 cut(s)	192, 395
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	439
MalI	GATC	4 cut(s)	102, 252, 390, 402
MboI	GATC	4 cut(s)	100, 250, 388, 400
MboII	GAAGA	2 cut(s)	185, 437
MhlI	GDGCHC	2 cut(s)	9, 436
MluCI	AATT	1 cut(s)	230
MnlI	CCTC	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	3 cut(s)	48, 114, 264
MwoI	GCNNNNNNNGC	4 cut(s)	13, 45, 212, 221
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	4 cut(s)	100, 250, 388, 400
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	2 cut(s)	162, 339
NruI	TCGCGA	1 cut(s)	264
NspV	TTCGAA	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 261, 442
PfeI	GAWTC	4 cut(s)	145, 197, 311, 378
PkrI	GCNGC	4 cut(s)	15, 126, 283, 462
Ple19I	CGATCG	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	162, 339
PvuI	CGATCG	1 cut(s)	403
RruI	TCGCGA	1 cut(s)	264
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
SacII	CCGCGG	1 cut(s)	115
SalI	GTCGAC	1 cut(s)	31
SatI	GCNGC	4 cut(s)	14, 125, 282, 461
Sau3AI	GATC	4 cut(s)	100, 250, 388, 400
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	9, 436
SetI	ASST	9 cut(s)	15, 38, 46, 90, 283, 297, 424, 433, 442
SfaNI	GCATC	2 cut(s)	192, 395
Sfr303I	CCGCGG	1 cut(s)	115
SfuI	TTCGAA	1 cut(s)	195
SgrBI	CCGCGG	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	2 cut(s)	112, 114
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	8 cut(s)	32, 84, 195, 351, 381, 399, 403, 436
TasI	AATT	1 cut(s)	230
TfiI	GAWTC	4 cut(s)	145, 197, 311, 378
TseI	GCWGC	4 cut(s)	13, 124, 281, 460
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.