Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

29401576 .. 29402043

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCCCGCCTTGCCGTCGAGCTCGTCAGTCAGCTTAAACCCCCTCGTCTCCACCGCAGCTTCAAAACAAAATCCGGAACTGAGCACTGAGAAAGCAGACATGGCAGAGAACAACAGCGGAGGCGGCGGCGGCGAAGTCGAGGCGAACCAGACGATCTACATCAACAACCTGAACGAGAAAATAAAGCTGGACGAACTGAAAAAGTCGCTTCTGGCTGTGTTCTCGCAGTTCGGGAAGATTGTGGAGGTCTTGGCCTTCAAGACGCTCAAGCACAAAGGTCAAGCCTGGCTCGTCTTCGAGGACGTCTCCTCCGCCACCAAAGCCCTTCACCAAATGCAGGGCTTCCCCTTTTACGACAAGCCTATGGTATTATGCAGTTCTAACCTAATTTTCTCTGTTTGTTTAATTTGGACATTTAACATTTCTTTGATTTTGTTTTGTTCTTTGAAATTCCGTTTGTATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005685 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

156

Amino Acids

17.07

Weight (kDa)

7.64

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	52 - 121	2.8e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	7 cut(s)	6, 54, 117, 123, 126, 129, 312
AcsI	RAATTY	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	63, 259, 448
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	4 cut(s)	21, 33, 59, 187
AluI	AGCT	4 cut(s)	21, 33, 59, 187
Alw21I	GWGCWC	2 cut(s)	23, 86
Alw26I	GTCTC	2 cut(s)	52, 310
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	2 cut(s)	23, 86
BbvI	GCAGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	52, 310
BisI	GCNGC	4 cut(s)	57, 124, 127, 130
BlsI	GCNGC	4 cut(s)	58, 125, 128, 131
Bme1390I	CCNGG	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	286
BpiI	GAAGAC	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuEI	CTTGAG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	158
BseAI	TCCGGA	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	71, 78
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	23, 86
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	52, 310
BsmBI	CGTCTC	2 cut(s)	52, 310
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	23, 86
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	7 cut(s)	6, 54, 117, 123, 126, 129, 312
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	2 cut(s)	72, 79
BspEI	TCCGGA	1 cut(s)	73
BssMI	GATC	1 cut(s)	153
BssNI	GRCGYC	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	80, 87
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	52, 310
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 101, 123, 129, 320
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	271
CviAII	CATG	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	80, 87
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	301
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	23
Esp3I	CGTCTC	2 cut(s)	52, 310
FaeI	CATG	1 cut(s)	103
FaiI	YATR	3 cut(s)	101, 365, 373
FatI	CATG	1 cut(s)	99
FauI	CCCGC	1 cut(s)	13
Fnu4HI	GCNGC	4 cut(s)	57, 124, 127, 130
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	4 cut(s)	57, 124, 127, 130
GluI	GCNGC	4 cut(s)	57, 124, 127, 130
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	103
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	1 cut(s)	320
Hpy188III	TCNNGA	3 cut(s)	74, 232, 259
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	265, 335
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	337, 375
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 101, 123, 129, 320
HpyF3I	CTNAG	2 cut(s)	80, 87
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	153
LpnPI	CCDG	8 cut(s)	87, 161, 173, 182, 197, 271, 298, 323
Lsp1109I	GCAGC	1 cut(s)	68
MaeII	ACGT	1 cut(s)	303
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	247, 286
MhlI	GDGCHC	2 cut(s)	23, 86
MluCI	AATT	3 cut(s)	387, 405, 449
MnlI	CCTC	6 cut(s)	53, 113, 133, 238, 292, 319
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	4 cut(s)	35, 404, 417, 466
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	5 cut(s)	10, 101, 123, 129, 320
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	103
PkrI	GCNGC	4 cut(s)	58, 125, 128, 131
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	35, 404, 417, 466
SatI	GCNGC	4 cut(s)	57, 124, 127, 130
Sau3AI	GATC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	23, 86
SetI	ASST	9 cut(s)	23, 35, 61, 171, 189, 249, 280, 306, 387
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	387, 405, 449
SsiI	CCGC	7 cut(s)	6, 54, 117, 123, 126, 129, 312
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	284
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	17, 138, 297
TasI	AATT	3 cut(s)	387, 405, 449
TauI	GCSGC	3 cut(s)	126, 129, 132
Tru1I	TTAA	4 cut(s)	35, 404, 417, 466
Tru9I	TTAA	4 cut(s)	35, 404, 417, 466
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	449
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.