pycom11g27300

Belongs to the BetVI family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
29605323 .. 29605613
291 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGCTGTGCTGGTACGCGTTACAAGACACTCTGGACGTGGAGAATTTGGTGTGCAAGTACCCTCTGGTTGAAGGAGATGTATTGGAGGGCAAGATTAAGTCCATTTCTTACGAGGTGAGCTTTCAAGCTTCCCCCATCGGCGGATGTACTTGTAAGATGATGAGTGAGTACGATGCCGCGGGTGACTTGGAGATCAACGAGGAAGAAATCAGGGGTGGCAAAGAAAGAGCAATGGGCATGTACAAAGTTGTTGAAGCTTACCTCTTCGAAAGTCCTGGTGCCTACGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

97

Amino Acids

10.72

Weight (kDa)

4.31

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AccII CGCG 2 cut(s) 17, 179
AciI CCGC 3 cut(s) 141, 177, 179
AcsI RAATTY 1 cut(s) 43
AfaI GTAC 5 cut(s) 14, 59, 148, 170, 242
AfiI CCNNNNNNNGG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 3 cut(s) 71, 125, 254
AjiI CACGTC 1 cut(s) 37
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 3 cut(s) 120, 128, 257
AluI AGCT 3 cut(s) 120, 128, 257
ApoI RAATTY 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 127, 194
AsuII TTCGAA 1 cut(s) 267
BanI GGYRCC 1 cut(s) 278
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 276
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 276
BmgBI CACGTC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 163
Bpu14I TTCGAA 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMI GCAATG 1 cut(s) 237
Bsh1236I CGCG 2 cut(s) 17, 179
BshNI GGYRCC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 140
Bsp119I TTCGAA 1 cut(s) 267
Bsp1407I TGTACA 1 cut(s) 240
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 3 cut(s) 141, 177, 179
BspFNI CGCG 2 cut(s) 17, 179
BspLI GGNNCC 1 cut(s) 280
BspT104I TTCGAA 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 267
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 2 cut(s) 17, 179
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 274
BstUI CGCG 2 cut(s) 17, 179
BtgI CCRYGG 1 cut(s) 177
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 149
Cfr42I CCGCGG 1 cut(s) 180
Csp6I GTAC 5 cut(s) 13, 58, 147, 169, 241
CviAII CATG 1 cut(s) 238
CviJI RGCY 3 cut(s) 120, 128, 257
CviKI_1 RGCY 3 cut(s) 120, 128, 257
CviQI GTAC 5 cut(s) 13, 58, 147, 169, 241
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
EciI GGCGGA 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 1 cut(s) 241
FaiI YATR 1 cut(s) 239
FatI CATG 1 cut(s) 237
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
Hin1II CATG 1 cut(s) 241
HindIII AAGCTT 2 cut(s) 126, 255
HphI GGTGA 2 cut(s) 127, 194
Hpy188III TCNNGA 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 1 cut(s) 241
KspI CCGCGG 1 cut(s) 180
Kzo9I GATC 1 cut(s) 192
LpnPI CCDG 4 cut(s) 17, 50, 196, 261
LweI GCATC 1 cut(s) 163
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 18, 182
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 2 cut(s) 215, 256
MluCI AATT 1 cut(s) 43
MluI ACGCGT 1 cut(s) 15
MnlI CCTC 5 cut(s) 72, 79, 106, 193, 272
MseI TTAA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MvnI CGCG 2 cut(s) 17, 179
NdeII GATC 1 cut(s) 192
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 241
NspV TTCGAA 1 cut(s) 267
PkrI GCNGC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 280
RsaI GTAC 5 cut(s) 14, 59, 148, 170, 242
RsaNI GTAC 5 cut(s) 13, 58, 147, 169, 241
SacII CCGCGG 1 cut(s) 180
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 276
SetI ASST 6 cut(s) 39, 117, 122, 130, 259, 264
SfaNI GCATC 1 cut(s) 163
Sfr303I CCGCGG 1 cut(s) 180
SfuI TTCGAA 1 cut(s) 267
SgrBI CCGCGG 1 cut(s) 180
Sse9I AATT 1 cut(s) 43
SsiI CCGC 3 cut(s) 141, 177, 179
StyD4I CCNGG 1 cut(s) 274
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 267
TasI AATT 1 cut(s) 43
TatI WGTACW 2 cut(s) 146, 240
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.