Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

29724082 .. 29724809

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGGTGTGGGCCCCACTGGCTAACGAAACTACACACTTTGGCACCTGAAATATATGGGCATGAAGATATAAAAAAGGCGCTGCTTCTGCTCCTAGTGGGTGCTCCTCACAGGAAACTAAAAGATGGAATGAAGATTAGAGGAGATTTACATATTTGTCTGATGGGTGATCCTGGAGTTGCAAAGAGCCAGCTTCTCAAACACATAATTATGGAGCAGCAGACTGTTAGCATTGCTAAGGCTGGGATCACTACGTCTTTGAATGCAAGAACTGCTGTTCTTGCTGCAGCAAATCCAGCATGGTACAAATCTTTCTACTTTTTAATCTGGTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016043 GO:0023052 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0065007 GO:0070887 GO:0071103 GO:0071310 GO:0071322 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

113

Amino Acids

12.42

Weight (kDa)

9.55

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM	PF00493	12 - 69	6.8e-21	MCM P-loop domain
MCM	PF00493	70 - 101	4.7e-13	MCM P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AclWI	GGATC	2 cut(s)	164, 254
AfaI	GTAC	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw21I	GWGCWC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	164, 254
AoxI	GGCC	1 cut(s)	11
ApaI	GGGCCC	1 cut(s)	15
ApeKI	GCWGC	4 cut(s)	82, 217, 284, 287
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	11, 12
AsuHPI	GGTGA	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	4 cut(s)	69, 229, 271, 299
BccI	CCATC	2 cut(s)	119, 157
BciT130I	CCWGG	1 cut(s)	174
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	83
BglI	GCCNNNNNGGC	1 cut(s)	19
BisI	GCNGC	4 cut(s)	83, 218, 285, 288
BlsI	GCNGC	4 cut(s)	84, 219, 286, 289
Bme1390I	CCNGG	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	11, 12
BmiI	GGNNCC	3 cut(s)	13, 14, 45
BmrFI	CCNGG	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	2 cut(s)	96, 156
BseSI	GKGCMC	1 cut(s)	15
BseXI	GCAGC	4 cut(s)	69, 229, 271, 299
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	13
Bsp120I	GGGCCC	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	15, 106
Bsp143I	GATC	2 cut(s)	169, 246
BspANI	GGCC	1 cut(s)	13
BspLI	GGNNCC	3 cut(s)	13, 14, 45
BspMAI	CTGCAG	1 cut(s)	289
BspPI	GGATC	2 cut(s)	164, 254
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	23
BssMI	GATC	2 cut(s)	169, 246
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	172, 249
BstMBI	GATC	2 cut(s)	169, 246
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 88, 272, 281, 296
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	15
BstV1I	GCAGC	4 cut(s)	69, 229, 271, 299
BsuRI	GGCC	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	191
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	11, 12
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	2 cut(s)	62, 300
CviJI	RGCY	5 cut(s)	13, 22, 189, 193, 242
CviKI_1	RGCY	5 cut(s)	13, 22, 189, 193, 242
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	2 cut(s)	171, 248
DpnII	GATC	2 cut(s)	169, 246
Eco24I	GRGCYC	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	2 cut(s)	65, 303
FaiI	YATR	8 cut(s)	55, 57, 63, 71, 153, 206, 212, 301
FatI	CATG	2 cut(s)	61, 299
Fnu4HI	GCNGC	4 cut(s)	83, 218, 285, 288
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	4 cut(s)	83, 218, 285, 288
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	4 cut(s)	83, 218, 285, 288
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	2 cut(s)	65, 303
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	3 cut(s)	182, 266, 287
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 88, 272, 281, 296
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	65, 303
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	169, 246
LmnI	GCTCC	3 cut(s)	96, 109, 214
LpnPI	CCDG	9 cut(s)	4, 60, 97, 159, 186, 203, 228, 309, 313
Lsp1109I	GCAGC	4 cut(s)	69, 229, 271, 299
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	254
MalI	GATC	2 cut(s)	171, 248
MboI	GATC	2 cut(s)	169, 246
MboII	GAAGA	2 cut(s)	77, 145
MhlI	GDGCHC	2 cut(s)	15, 106
MluCI	AATT	1 cut(s)	207
MnlI	CCTC	2 cut(s)	117, 134
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	5 cut(s)	19, 88, 272, 281, 296
NdeII	GATC	2 cut(s)	169, 246
NlaIII	CATG	2 cut(s)	65, 303
NlaIV	GGNNCC	3 cut(s)	13, 14, 45
PctI	GAATGC	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	84, 219, 286, 289
Psp6I	CCWGG	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	3 cut(s)	13, 14, 45
PspOMI	GGGCCC	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	11, 12
PstI	CTGCAG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	4 cut(s)	83, 218, 285, 288
Sau3AI	GATC	2 cut(s)	169, 246
Sau96I	GGNCC	2 cut(s)	11, 12
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	2 cut(s)	15, 106
SetI	ASST	3 cut(s)	49, 195, 257
SfcI	CTRYAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	257
TasI	AATT	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	1 cut(s)	23
TseI	GCWGC	4 cut(s)	82, 217, 284, 287
TspDTI	ATGAA	3 cut(s)	78, 146, 322
TspRI	CASTG	1 cut(s)	23
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.