Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

29844497 .. 29844742

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTCACTGACAAATGCTAGTAATTATGATATGGAGGATGGTCATACTGCTGGTGGATTCGGAACTTACGATCATACATTATGGGATTGGGAGAGTGTACTTATCCAAGCTCGGACTGAGCATGACTACTTATGGGATGGCCATGACAGACAAAACATGCTGTCTTTGTTGCGGGAAGGAGAATCTGCTACTGCTGCTGGTGATGATGATCACGCTGATGCCATGGTGGCTTGGCTTCTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008285 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0040008 GO:0042127 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046148 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding P_C

Protein Analysis

82

Amino Acids

9.09

Weight (kDa)

4.18

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	139
AfaI	GTAC	1 cut(s)	99
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	2 cut(s)	32, 131
BclI	TGATCA	1 cut(s)	208
BfaI	CTAG	1 cut(s)	18
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmsI	GCATC	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	43, 142
BseJI	GATNNNNATC	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	181
BshFI	GGCC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	70, 208
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	70, 208
BssT1I	CCWWGG	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	43, 142
BstKTI	GATC	2 cut(s)	73, 211
BstMBI	GATC	2 cut(s)	70, 208
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 227
BstNSI	RCATGY	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	43, 142
BtsIMutI	CAGTG	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	4 cut(s)	122, 143, 157, 223
CviJI	RGCY	4 cut(s)	110, 141, 230, 235
CviKI_1	RGCY	4 cut(s)	110, 141, 230, 235
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	72, 210
DpnII	GATC	2 cut(s)	70, 208
EaeI	YGGCCR	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	4 cut(s)	125, 146, 160, 226
FatI	CATG	4 cut(s)	121, 142, 156, 222
FauI	CCCGC	1 cut(s)	165
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	2 cut(s)	50, 149
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	4 cut(s)	125, 146, 160, 226
HinfI	GANTC	2 cut(s)	57, 182
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	62, 114
Hpy188III	TCNNGA	1 cut(s)	243
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 227
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	125, 146, 160, 226
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	70, 208
LpnPI	CCDG	2 cut(s)	36, 183
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	72, 210
MboI	GATC	2 cut(s)	70, 208
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	1 cut(s)	22
MluNI	TGGCCA	1 cut(s)	141
MnlI	CCTC	1 cut(s)	28
Mox20I	TGGCCA	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	194, 227
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	70, 208
NlaIII	CATG	4 cut(s)	125, 146, 160, 226
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	57, 182
PkrI	GCNGC	1 cut(s)	196
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	70, 208
SetI	ASST	1 cut(s)	112
SfaNI	GCATC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	222
TasI	AATT	1 cut(s)	22
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	57, 182
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	3
TspRI	CASTG	1 cut(s)	12
XceI	RCATGY	1 cut(s)	160
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.