Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012401

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

39927 .. 40340

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCACAATGCTTAGCTATTGCCGATACCCAAGACGCCTTTGGTTGAATGTTCACACCCGATCCACCGTCTGCACTTCCTACATTCAGTCCCGGAAATTTAAACAGGAAAACTTTAATTGTTTCCTCCCGGTCTGCTGTAGTCAGCTTCACGGTGTGCCTGACTGGCGAGTCCGCCGTCTCCACGGCTTCCCTTTTAGCGGGCTGCTCCTCAAGCCTTCGAGTGCCGATCTTCGCGAGACGGCCCAAGCGAAGATCTTCGATCCGAATCTTCGCATCTACTCTCTCTTAGAGGATGAACTACGCCTTCGCTATCGCAAGAATATAGCGATCGAAGAGAGCTATCGCTCAGCTGCTTCGCGTATTACTCACGAAAGCCGTATTGCCCGAAGGGGGCATGCCGCAAGAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0019843 GO:0022625 GO:0022626 GO:0031974 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_L16 Ribosomal_S3_C

Protein Analysis

138

Amino Acids

16.09

Weight (kDa)

10.24

Isoelectric Point (pI)

64.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AccII	CGCG	2 cut(s)	237, 361
AciI	CCGC	3 cut(s)	175, 201, 402
AclWI	GGATC	2 cut(s)	57, 257
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	37
AdeI	CACNNNGTG	1 cut(s)	157
AfiI	CCNNNNNNNGG	2 cut(s)	200, 393
AgsI	TTSAA	1 cut(s)	49
AluBI	AGCT	4 cut(s)	18, 148, 342, 353
AluI	AGCT	4 cut(s)	18, 148, 342, 353
Alw26I	GTCTC	2 cut(s)	185, 233
AlwI	GGATC	2 cut(s)	57, 257
AoxI	GGCC	2 cut(s)	3, 243
ApeKI	GCWGC	2 cut(s)	205, 353
ApoI	RAATTY	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	2 cut(s)	94, 131
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	192, 340
BceAI	ACGGC	4 cut(s)	162, 202, 258, 363
BcnI	CCSGG	2 cut(s)	94, 131
BcoDI	GTCTC	2 cut(s)	185, 233
BfmI	CTRYAG	1 cut(s)	139
BglI	GCCNNNNNGGC	1 cut(s)	166
BglII	AGATCT	1 cut(s)	255
BisI	GCNGC	3 cut(s)	206, 354, 402
BlpI	GCTNAGC	2 cut(s)	14, 349
BlsI	GCNGC	3 cut(s)	207, 355, 403
Bme1390I	CCNGG	2 cut(s)	94, 131
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	94, 131
BmsI	GCATC	1 cut(s)	285
Bpu1102I	GCTNAGC	2 cut(s)	14, 349
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	94, 131
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 393
Bse1I	ACTGG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	301
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	200, 393
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	192, 340
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	2 cut(s)	237, 361
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	5, 245
BsiEI	CGRYCG	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	94, 131
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	2 cut(s)	200, 393
BsmAI	GTCTC	2 cut(s)	185, 233
BsmBI	CGTCTC	2 cut(s)	185, 233
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	5, 245
Bsp143I	GATC	5 cut(s)	62, 229, 255, 262, 330
Bsp1720I	GCTNAGC	2 cut(s)	14, 349
Bsp68I	TCGCGA	1 cut(s)	237
BspACI	CCGC	3 cut(s)	175, 201, 402
BspANI	GGCC	2 cut(s)	5, 245
BspCNI	CTCAG	1 cut(s)	362
BspFNI	CGCG	2 cut(s)	237, 361
BspPI	GGATC	2 cut(s)	57, 257
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	5 cut(s)	62, 229, 255, 262, 330
BssNI	GRCGYC	1 cut(s)	37
Bst4CI	ACNGT	2 cut(s)	70, 155
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	203, 399
BstDEI	CTNAG	3 cut(s)	14, 289, 349
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	2 cut(s)	237, 361
BstKTI	GATC	5 cut(s)	65, 232, 258, 265, 333
BstMAI	GTCTC	2 cut(s)	185, 233
BstMBI	GATC	5 cut(s)	62, 229, 255, 262, 330
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 214, 407
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	92, 129
BstSFI	CTRYAG	1 cut(s)	139
BstUI	CGCG	2 cut(s)	237, 361
BstV1I	GCAGC	2 cut(s)	192, 340
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	5, 245
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	301
BtuMI	TCGCGA	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	203, 399
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	45
CviAII	CATG	1 cut(s)	398
DdeI	CTNAG	3 cut(s)	14, 289, 349
DpnI	GATC	5 cut(s)	64, 231, 257, 264, 332
DpnII	GATC	5 cut(s)	62, 229, 255, 262, 330
DraI	TTTAAA	1 cut(s)	103
DraIII	CACNNNGTG	1 cut(s)	157
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	164
Esp3I	CGTCTC	2 cut(s)	185, 233
FaeI	CATG	1 cut(s)	401
FaiI	YATR	2 cut(s)	326, 399
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	1 cut(s)	397
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	3 cut(s)	206, 354, 402
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	3 cut(s)	206, 354, 402
GluI	GCNGC	3 cut(s)	206, 354, 402
HaeIII	GGCC	2 cut(s)	5, 245
HapII	CCGG	2 cut(s)	94, 131
HgaI	GACGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	401
HinfI	GANTC	2 cut(s)	171, 268
HpaII	CCGG	2 cut(s)	94, 131
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	2 cut(s)	236, 371
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	3 cut(s)	228, 317, 384
HpyCH4III	ACNGT	2 cut(s)	70, 155
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 214, 407
HpyF3I	CTNAG	3 cut(s)	14, 289, 349
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	401
Kzo9I	GATC	5 cut(s)	62, 229, 255, 262, 330
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	5 cut(s)	92, 107, 144, 151, 174
Lsp1109I	GCAGC	2 cut(s)	192, 340
LweI	GCATC	1 cut(s)	285
MalI	GATC	5 cut(s)	64, 231, 257, 264, 332
MboI	GATC	5 cut(s)	62, 229, 255, 262, 330
MboII	GAAGA	5 cut(s)	224, 250, 263, 265, 347
MflI	RGATCY	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	98, 118
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	3 cut(s)	137, 221, 286
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	102, 117
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	2 cut(s)	94, 131
MspR9I	CCNGG	2 cut(s)	94, 131
MvnI	CGCG	2 cut(s)	237, 361
MwoI	GCNNNNNNNGC	3 cut(s)	166, 214, 407
NciI	CCSGG	2 cut(s)	94, 131
NdeII	GATC	5 cut(s)	62, 229, 255, 262, 330
NlaIII	CATG	1 cut(s)	401
NruI	TCGCGA	1 cut(s)	237
NspI	RCATGY	1 cut(s)	401
PaeI	GCATGC	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	207, 355, 403
Ple19I	CGATCG	1 cut(s)	333
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	255
PvuI	CGATCG	1 cut(s)	333
PvuII	CAGCTG	1 cut(s)	353
RruI	TCGCGA	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	102, 117
SatI	GCNGC	3 cut(s)	206, 354, 402
Sau3AI	GATC	5 cut(s)	62, 229, 255, 262, 330
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	2 cut(s)	94, 131
SetI	ASST	4 cut(s)	20, 150, 344, 355
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SphI	GCATGC	1 cut(s)	401
Sse9I	AATT	2 cut(s)	98, 118
SsiI	CCGC	3 cut(s)	175, 201, 402
StyD4I	CCNGG	2 cut(s)	92, 129
TaaI	ACNGT	2 cut(s)	70, 155
TaqI	TCGA	3 cut(s)	221, 261, 333
TasI	AATT	2 cut(s)	98, 118
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	102, 117
Tru9I	TTAA	2 cut(s)	102, 117
TseI	GCWGC	2 cut(s)	205, 353
TspDTI	ATGAA	1 cut(s)	312
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.