pycom12652g00030

isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012652
N/A
Physical Location & Seq
Reverse (-)
29788 .. 31778
1991 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGCAAGATGGAAAGCCCAATCCCACCGAAACGACGATGTTGATGCCTCAGAATTATACTTTAAGAAATGACGGGGTTATCCCTCAGCTGTTTACTTCAGTACCAACTCTCAATGATGCTGCCACTTATCTTTCTCAGACAACTTCATTATTTACACGCTGTTTCACTGATGATTCTGTGGAACCTTCTTCTAGTGATTCAGGGGTTTCCAATGGAAATGCTCAAGAATTGGTGACATTTTGGTCTCGGCCAACTTGGGCCTCCCTTGCTACATCTAGTGATGACATGTCATCTAGTGGAAACCATTCATCGACCACAGAGTCATCTAGTACTGCAACAGATGCTCCCTCTGTAGTTGATGGAACAGCGAGAGGCAGGAGATTCATCTCGAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

14.13

Weight (kDa)

4.44

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 241, 319
AcoI YGGCCR 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 2 cut(s) 102, 331
AflIII ACRYGT 1 cut(s) 285
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 249
AoxI GGCC 2 cut(s) 248, 258
ApeKI GCWGC 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 244
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 106
BccI CCATC 2 cut(s) 2, 353
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 5 cut(s) 192, 276, 294, 327, 397
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmcAI AGTACT 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 183
BmsI GCATC 3 cut(s) 33, 106, 331
Bpu10I CCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
BseMII CTCAG 3 cut(s) 62, 98, 149
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 2 cut(s) 250, 260
BsmAI GTCTC 1 cut(s) 249
BsnI GGCC 2 cut(s) 250, 260
Bso31I GGTCTC 1 cut(s) 249
BspANI GGCC 2 cut(s) 250, 260
BspCNI CTCAG 3 cut(s) 61, 97, 148
BspLI GGNNCC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 341
BstDEI CTNAG 3 cut(s) 48, 84, 135
BstMAI GTCTC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 266, 341
BstNSI RCATGY 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 106
BsuRI GGCC 2 cut(s) 250, 260
BtsIMutI CAGTG 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 2 cut(s) 101, 330
CviAII CATG 1 cut(s) 286
CviJI RGCY 4 cut(s) 16, 88, 250, 260
CviKI_1 RGCY 4 cut(s) 16, 88, 250, 260
CviQI GTAC 2 cut(s) 101, 330
DdeI CTNAG 3 cut(s) 48, 84, 135
DrdI GACNNNNNNGTC 2 cut(s) 241, 319
DseDI GACNNNNNNGTC 2 cut(s) 241, 319
EaeI YGGCCR 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 81
FaeI CATG 1 cut(s) 289
FaiI YATR 2 cut(s) 57, 287
FatI CATG 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 5 cut(s) 192, 276, 294, 327, 397
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 2 cut(s) 250, 260
Hin1II CATG 1 cut(s) 289
HinfI GANTC 4 cut(s) 173, 197, 320, 381
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 51, 138
Hpy188III TCNNGA 2 cut(s) 224, 388
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 4, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 341
HpyF3I CTNAG 3 cut(s) 48, 84, 135
Hsp92II CATG 1 cut(s) 289
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 2 cut(s) 186, 361
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 3 cut(s) 33, 106, 331
MaeI CTAG 5 cut(s) 192, 276, 294, 327, 397
MaeIII GTNAC 1 cut(s) 232
MboII GAAGA 1 cut(s) 180
MluCI AATT 2 cut(s) 52, 227
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 5 cut(s) 57, 93, 271, 358, 365
MroXI GAANNNNTTC 1 cut(s) 304
MseI TTAA 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 266, 341
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 183
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 289
PciI ACATGT 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 304
PfeI GAWTC 3 cut(s) 173, 197, 381
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PscI ACATGT 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 258
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 2 cut(s) 102, 331
RsaNI GTAC 2 cut(s) 101, 330
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 258
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 1 cut(s) 329
SetI ASST 2 cut(s) 90, 187
SfaNI GCATC 3 cut(s) 33, 106, 331
SfcI CTRYAG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 2 cut(s) 52, 227
SspMI CTAG 5 cut(s) 192, 276, 294, 327, 397
TaqI TCGA 2 cut(s) 311, 389
TasI AATT 2 cut(s) 52, 227
TatI WGTACW 1 cut(s) 329
TfiI GAWTC 3 cut(s) 173, 197, 381
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 135, 297, 373
TspRI CASTG 1 cut(s) 172
XceI RCATGY 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 304
XspI CTAG 5 cut(s) 192, 276, 294, 327, 397
ZrmI AGTACT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.