pycom12g00440

V-type proton ATPase subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
436680 .. 437292
613 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGGGGTTCTTATTTGCGACCCTAATTTTCGTTGTGATTGGGATTATTGCGTCCTTATGTACCAGAATTTGCTGCACAGAGGACCCTCTGCTAACTTCTCTCGTTCTTGAGCGCTGGAGTAGACGTGGCCGTGCAGTGCGGTCCATGCGTCAAATGCTTGAAAAGAACTTGCATCGCAAATCAGTATTGCTACACACAATACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.83

Weight (kDa)

10.71

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 121
AciI CCGC 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 66
AfaI GTAC 1 cut(s) 61
AfeI AGCGCT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 161
AjiI CACGTC 1 cut(s) 125
Aor51HI AGCGCT 1 cut(s) 113
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 66
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 82, 141
AvaII GGWCC 2 cut(s) 82, 141
BbvI GCAGC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 115
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme18I GGWCC 2 cut(s) 82, 141
BmgBI CACGTC 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 82, 141
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
BseXI GCAGC 1 cut(s) 59
BsgI GTGCAG 2 cut(s) 58, 153
BshFI GGCC 1 cut(s) 129
BsnI GGCC 1 cut(s) 129
BspACI CCGC 1 cut(s) 139
BspANI GGCC 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstMWI GCNNNNNNNGC 2 cut(s) 145, 154
BstSFI CTRYAG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 158
BtrI CACGTC 1 cut(s) 125
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 2 cut(s) 82, 141
CseI GACGC 2 cut(s) 39, 137
Csp6I GTAC 1 cut(s) 60
CviAII CATG 1 cut(s) 145
CviJI RGCY 1 cut(s) 129
CviKI_1 RGCY 1 cut(s) 129
CviQI GTAC 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 127
Eco47I GGWCC 2 cut(s) 82, 141
Eco47III AGCGCT 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 82
FaeI CATG 1 cut(s) 148
FaiI YATR 2 cut(s) 58, 146
FatI CATG 1 cut(s) 144
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 73
GlaI GCGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 136
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 1 cut(s) 129
HgaI GACGC 2 cut(s) 39, 137
HhaI GCGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 148
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 122
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 75, 134, 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 154
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 1 cut(s) 148
HspAI GCGC 1 cut(s) 112
LpnPI CCDG 2 cut(s) 76, 100
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 1 cut(s) 181
MaeII ACGT 1 cut(s) 124
MluCI AATT 2 cut(s) 24, 66
MnlI CCTC 2 cut(s) 73, 96
MwoI GCNNNNNNNGC 2 cut(s) 145, 154
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 84
PkrI GCNGC 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 2 cut(s) 82, 141
PspPPI RGGWCCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SatI GCNGC 1 cut(s) 73
Sau96I GGNCC 2 cut(s) 82, 141
SetI ASST 1 cut(s) 127
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 203
SgeI CNNG 9 cut(s) 75, 113, 119, 127, 137, 143, 157, 170, 181
SinI GGWCC 2 cut(s) 82, 141
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 2 cut(s) 24, 66
SsiI CCGC 1 cut(s) 139
TaaI ACNGT 1 cut(s) 204
TaiI ACGT 1 cut(s) 127
TasI AATT 2 cut(s) 24, 66
TscAI CASTG 1 cut(s) 141
TseI GCWGC 1 cut(s) 72
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 2 cut(s) 82, 141
XapI RAATTY 1 cut(s) 66
XmiI GTMKAC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.