pycom12g00520

Predicted membrane protein (DUF2232)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Reverse (-)
480922 .. 481615
694 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ATGGAGGTTCGATCACTGGGTGCTGTAGGGTATGTCTTGATATCGTCGTTCTTGATAAGTGAAAACATACTTGCTTTGGTAATTAACCATCCTTTGTTTGATTCGTTTTATGTAGTACCGAGATTTGATATGTTTTCTGTTTGTGATTTGGTATGCTTGCAGATCACTATAAACATTCATGCTTCTCTAACATTCATATTTACTGCATCGGGCATCTATTCAGTCCCGTCAATGGAAGCGATTTATGCCTTATTTGGTTATCAGGTATTGATTAATAGCGGATCCTTCATGTTCTTGCTCCACCTACTGTATTCGGTGTTCCTTACGAGGCTCGGGATGAAAGCATCATTACGATTGCCAAGATGGCTGGAGAAGGCTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.32

Weight (kDa)

6.81

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 279
AclWI GGATC 2 cut(s) 276, 289
AdeI CACNNNGTG 1 cut(s) 20
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 232
AlwI GGATC 2 cut(s) 276, 289
Ama87I CYCGRG 1 cut(s) 332
AseI ATTAAT 1 cut(s) 273
AvaI CYCGRG 1 cut(s) 332
BamHI GGATCC 1 cut(s) 281
BccI CCATC 2 cut(s) 96, 357
BfmI CTRYAG 1 cut(s) 24
BglI GCCNNNNNGGC 1 cut(s) 364
BmeT110I CYCGRG 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 283
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 3 cut(s) 215, 222, 353
BmuI ACTGGG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 88, 342
BseLI CCNNNNNNNGG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 332
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 332
Bsp143I GATC 3 cut(s) 11, 162, 281
BspACI CCGC 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 283
BspPI GGATC 2 cut(s) 276, 289
BsrI ACTGG 1 cut(s) 21
BssMI GATC 3 cut(s) 11, 162, 281
Bst4CI ACNGT 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 158
BstF5I GGATG 2 cut(s) 88, 342
BstKTI GATC 3 cut(s) 14, 165, 284
BstMBI GATC 3 cut(s) 11, 162, 281
BstMWI GCNNNNNNNGC 2 cut(s) 245, 364
BstSFI CTRYAG 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BtsCI GGATG 2 cut(s) 88, 342
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 116
CviAII CATG 2 cut(s) 179, 289
CviJI RGCY 3 cut(s) 331, 367, 377
CviKI_1 RGCY 3 cut(s) 331, 367, 377
CviQI GTAC 1 cut(s) 116
DpnI GATC 3 cut(s) 13, 164, 283
DpnII GATC 3 cut(s) 11, 162, 281
DraIII CACNNNGTG 1 cut(s) 20
Eco32I GATATC 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 332
EcoRV GATATC 1 cut(s) 42
FaeI CATG 2 cut(s) 182, 292
FaqI GGGAC 1 cut(s) 209
FatI CATG 2 cut(s) 178, 288
FokI GGATG 2 cut(s) 75, 349
Hin1II CATG 2 cut(s) 182, 292
HinfI GANTC 1 cut(s) 101
Hpy188III TCNNGA 3 cut(s) 37, 52, 334
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 295, 367
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4V TGCA 2 cut(s) 160, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 364
Hsp92II CATG 2 cut(s) 182, 292
Kzo9I GATC 3 cut(s) 11, 162, 281
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 3 cut(s) 2, 248, 353
LweI GCATC 3 cut(s) 215, 222, 353
MalI GATC 3 cut(s) 13, 164, 283
MboI GATC 3 cut(s) 11, 162, 281
MflI RGATCY 1 cut(s) 281
MluCI AATT 1 cut(s) 81
MnlI CCTC 1 cut(s) 321
MseI TTAA 2 cut(s) 84, 273
MwoI GCNNNNNNNGC 2 cut(s) 245, 364
NdeII GATC 3 cut(s) 11, 162, 281
NlaIII CATG 2 cut(s) 182, 292
NlaIV GGNNCC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 283
PsrI GAACNNNNNNTAC 2 cut(s) 302, 334
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 84, 273
Sau3AI GATC 3 cut(s) 11, 162, 281
SetI ASST 3 cut(s) 9, 267, 306
SfaNI GCATC 3 cut(s) 215, 222, 353
SfcI CTRYAG 1 cut(s) 24
Sse9I AATT 1 cut(s) 81
SsiI CCGC 1 cut(s) 279
TaaI ACNGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 81
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 84, 273
Tru9I TTAA 2 cut(s) 84, 273
TscAI CASTG 1 cut(s) 21
TspDTI ATGAA 4 cut(s) 167, 184, 277, 353
TspRI CASTG 1 cut(s) 21
VspI ATTAAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.