pycom12g01270

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Reverse (-)
1078351 .. 1078629
279 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGGATCACTACAAGGTATTGGGGCTGACGAGGAACGCGAGCAAAGCCGAAATCAAGGAAGCGTTCAGGAAGCTAGCGGTGAAGCTGCACCCAGACAAGCATTCCGCTTCCCCCAAGGCGGAGAGAGACAGCGCCACCGTCCGATTCAAGCAGGTCTCCGAGGCCTACCAGGTCCTCACCGATCGATCGCAAGCGCGCCGACTACAATTTCCAGAGCTCTCGCCGCCCCCACAACAATTACAATACCTACACTCGCAGTTACGGTTATGGATACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

93

Amino Acids

10.71

Weight (kDa)

10.06

Isoelectric Point (pI)

61.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 2 - 65 2.5e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 142
AccII CGCG 2 cut(s) 38, 196
AciI CCGC 4 cut(s) 77, 105, 119, 224
AclWI GGATC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 3 cut(s) 73, 85, 217
AluI AGCT 3 cut(s) 73, 85, 217
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 120, 160
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 85
AspLEI GCGC 3 cut(s) 134, 196, 198
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 91, 169
AsuNHI GCTAGC 1 cut(s) 73
AvaII GGWCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 264
BcoDI GTCTC 2 cut(s) 120, 160
BfaI CTAG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 142
BfuI GTATCC 1 cut(s) 264
BisI GCNGC 2 cut(s) 86, 224
BlsI GCNGC 2 cut(s) 87, 225
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 170
BmtI GCTAGC 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 184
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 114, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 114, 159
BseLI CCNNNNNNNGG 1 cut(s) 118
BsePI GCGCGC 1 cut(s) 194
BseXI GCAGC 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 71
Bsh1236I CGCG 2 cut(s) 38, 196
Bsh1285I CGRYCG 2 cut(s) 184, 188
BshFI GGCC 1 cut(s) 164
BshVI ATCGAT 1 cut(s) 184
BsiEI CGRYCG 2 cut(s) 184, 188
BsiHKAI GWGCWC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 2 cut(s) 120, 160
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 3 cut(s) 4, 181, 185
BspACI CCGC 4 cut(s) 77, 105, 119, 224
BspANI GGCC 1 cut(s) 164
BspDI ATCGAT 1 cut(s) 184
BspFNI CGCG 2 cut(s) 38, 196
BspMI ACCTGC 1 cut(s) 142
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 114, 159
BssHII GCGCGC 1 cut(s) 194
BssMI GATC 3 cut(s) 4, 181, 185
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 3 cut(s) 139, 264, 276
BstC8I GCNNGC 4 cut(s) 40, 75, 192, 196
BstFNI CGCG 2 cut(s) 38, 196
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 3 cut(s) 134, 196, 198
BstKTI GATC 3 cut(s) 7, 184, 188
BstMAI GTCTC 2 cut(s) 120, 160
BstMBI GATC 3 cut(s) 4, 181, 185
BstMCI CGRYCG 2 cut(s) 184, 188
BstMWI GCNNNNNNNGC 2 cut(s) 44, 223
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 2 cut(s) 38, 196
BstV1I GCAGC 1 cut(s) 72
Bsu15I ATCGAT 1 cut(s) 184
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 164
BsuTUI ATCGAT 1 cut(s) 184
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 4 cut(s) 40, 75, 192, 196
CfoI GCGC 3 cut(s) 134, 196, 198
Cfr13I GGNCC 1 cut(s) 172
ClaI ATCGAT 1 cut(s) 184
CsiI ACCWGGT 1 cut(s) 168
CviJI RGCY 6 cut(s) 25, 47, 73, 85, 164, 217
CviKI_1 RGCY 6 cut(s) 25, 47, 73, 85, 164, 217
DpnI GATC 3 cut(s) 6, 183, 187
DpnII GATC 3 cut(s) 4, 181, 185
EciI GGCGGA 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 114
FaiI YATR 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 86, 224
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 2 cut(s) 86, 224
FspBI CTAG 1 cut(s) 74
GlaI GCGC 3 cut(s) 133, 195, 197
GluI GCNGC 2 cut(s) 86, 224
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 164
HhaI GCGC 3 cut(s) 134, 196, 198
Hin6I GCGC 3 cut(s) 132, 194, 196
HinP1I GCGC 3 cut(s) 132, 194, 196
HinfI GANTC 1 cut(s) 144
HphI GGTGA 2 cut(s) 91, 169
Hpy188I TCNGA 2 cut(s) 143, 160
Hpy188III TCNNGA 2 cut(s) 67, 212
HpyCH4III ACNGT 3 cut(s) 139, 264, 276
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 223
HspAI GCGC 3 cut(s) 132, 194, 196
Kzo9I GATC 3 cut(s) 4, 181, 185
LpnPI CCDG 6 cut(s) 52, 105, 137, 155, 182, 225
Lsp1109I GCAGC 1 cut(s) 72
MabI ACCWGGT 1 cut(s) 168
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 258
MalI GATC 3 cut(s) 6, 183, 187
MboI GATC 3 cut(s) 4, 181, 185
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 2 cut(s) 206, 236
MnlI CCTC 3 cut(s) 24, 154, 185
MspR9I CCNGG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 2 cut(s) 38, 196
MwoI GCNNNNNNNGC 2 cut(s) 44, 223
NdeII GATC 3 cut(s) 4, 181, 185
NheI GCTAGC 1 cut(s) 73
PauI GCGCGC 1 cut(s) 194
PceI AGGCCT 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 2 cut(s) 87, 225
Ple19I CGATCG 2 cut(s) 184, 188
PpuMI RGGWCCY 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 219
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspPI GGNCC 1 cut(s) 172
PspPPI RGGWCCY 1 cut(s) 172
PteI GCGCGC 1 cut(s) 194
PvuI CGATCG 2 cut(s) 184, 188
SacI GAGCTC 1 cut(s) 219
SatI GCNGC 2 cut(s) 86, 224
Sau3AI GATC 3 cut(s) 4, 181, 185
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 219
SetI ASST 7 cut(s) 18, 75, 87, 156, 174, 219, 249
SexAI ACCWGGT 1 cut(s) 168
SinI GGWCC 1 cut(s) 172
Sse9I AATT 2 cut(s) 206, 236
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 4 cut(s) 77, 105, 119, 224
SspMI CTAG 1 cut(s) 74
SstI GAGCTC 1 cut(s) 219
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 3 cut(s) 139, 264, 276
TaqI TCGA 1 cut(s) 184
TasI AATT 2 cut(s) 206, 236
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 1 cut(s) 144
TseI GCWGC 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 172
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.