pycom12g01470

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
1210703 .. 1212448
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 537 bp
ATGAGACGGAGAGCAAGAACAACAAGGGGAAAGTCGACAGAGGGTTCGATTGGGAAACCGGAGCCGATTTCCGGGCGAATCAGCAAGCGAATCGGGCCGGCAACCCGTACTCGTCTGCCGGGTTGCAGAGGCAGTCGAGCGATCGACGGGTTCGGGTACGTGCCGGACGATGTGTTCAAGGTTAGTGGTGGAGCGGGTGAATTTCGAATGAAAGGTGTGGATGGAGCTGTTACGGCCACTGGTGGCGGCGGCGGTTCTTCTTCAGGGAAGAGCTGGGCTCAGCAGACTGAGGAGAGTTATCAGCTGCAGCTGGCTTTGGCTCTTCGGCTTTCATCGGAGGCTACATGCGCCGATGATCCTAACTTGATCGATCCAGTGCCGGATGAATCGGCTTCCAGGACGTCCAGCTCTGTTGATGCCGTATCGCATCGGTTTTGGGTGAATGGCTGTCTGTCATACTTTGACAAAGTGCCTGATGGATTTTACCTAATTCATGGGATAGATCGATCAGCAGTATGTATGGACTGTGTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

179

Amino Acids

18.92

Weight (kDa)

8.65

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 138 - 175 1.3e-10 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 404
AccBSI CCGCTC 1 cut(s) 194
AccI GTMKAC 1 cut(s) 35
AciI CCGC 4 cut(s) 194, 246, 249, 252
AclWI GGATC 2 cut(s) 350, 365
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 401
AfaI GTAC 2 cut(s) 109, 158
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 1 cut(s) 395
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
AluBI AGCT 5 cut(s) 227, 273, 304, 310, 408
AluI AGCT 5 cut(s) 227, 273, 304, 310, 408
Alw21I GWGCWC 1 cut(s) 534
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 2 cut(s) 350, 365
AoxI GGCC 2 cut(s) 95, 234
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 2 cut(s) 304, 307
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 95
AsuC2I CCSGG 2 cut(s) 73, 120
AsuHPI GGTGA 2 cut(s) 209, 451
AsuII TTCGAA 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 534
BanII GRGCYC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 291, 319
BccI CCATC 2 cut(s) 215, 470
BceAI ACGGC 2 cut(s) 249, 404
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 1 cut(s) 397
BcnI CCSGG 2 cut(s) 73, 120
BfmI CTRYAG 1 cut(s) 305
BisI GCNGC 4 cut(s) 247, 250, 305, 308
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 4 cut(s) 248, 251, 306, 309
Bme1390I CCNGG 3 cut(s) 73, 120, 397
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 3 cut(s) 73, 120, 397
BmsI GCATC 2 cut(s) 406, 436
BplI GAGNNNNNCTC 2 cut(s) 262, 294
Bpu1102I GCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 205
BpuMI CCSGG 2 cut(s) 73, 120
Bsa29I ATCGAT 2 cut(s) 369, 505
BsaAI YACGTR 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 401
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 2 cut(s) 244, 374
BseBI CCWGG 1 cut(s) 397
BseCI ATCGAT 2 cut(s) 369, 505
BseGI GGATG 2 cut(s) 226, 388
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 2 cut(s) 279, 293
BseNI ACTGG 2 cut(s) 244, 374
BseRI GAGGAG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 2 cut(s) 291, 319
BseYI CCCAGC 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 97, 236
BshVI ATCGAT 2 cut(s) 369, 505
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 6 cut(s) 59, 72, 98, 119, 164, 380
BslI CCNNNNNNNGG 1 cut(s) 71
BsnI GGCC 2 cut(s) 97, 236
Bsp119I TTCGAA 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 280, 534
Bsp143I GATC 6 cut(s) 141, 355, 366, 370, 502, 506
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 4 cut(s) 194, 246, 249, 252
BspANI GGCC 2 cut(s) 97, 236
BspCNI CTCAG 2 cut(s) 280, 292
BspDI ATCGAT 2 cut(s) 369, 505
BspLI GGNNCC 1 cut(s) 63
BspMAI CTGCAG 1 cut(s) 309
BspPI GGATC 2 cut(s) 350, 365
BspQI GCTCTTC 2 cut(s) 263, 327
BspT104I TTCGAA 1 cut(s) 205
BsrBI CCGCTC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 2 cut(s) 244, 374
BssAI RCCGGY 1 cut(s) 97
BssMI GATC 6 cut(s) 141, 355, 366, 370, 502, 506
BssNI GRCGYC 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 527
Bst6I CTCTTC 2 cut(s) 263, 327
BstACI GRCGYC 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 205
BstC8I GCNNGC 3 cut(s) 86, 99, 312
BstDEI CTNAG 2 cut(s) 279, 288
BstF5I GGATG 2 cut(s) 226, 388
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 6 cut(s) 144, 358, 369, 373, 505, 509
BstMBI GATC 6 cut(s) 141, 355, 366, 370, 502, 506
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 94, 233, 347
BstNI CCWGG 1 cut(s) 397
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 3 cut(s) 71, 118, 395
BstSFI CTRYAG 1 cut(s) 305
BstSLI GKGCMC 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 291, 319
Bsu15I ATCGAT 2 cut(s) 369, 505
BsuRI GGCC 2 cut(s) 97, 236
BsuTUI ATCGAT 2 cut(s) 369, 505
BtsCI GGATG 2 cut(s) 226, 388
BtsIMutI CAGTG 3 cut(s) 237, 381, 532
Cac8I GCNNGC 3 cut(s) 86, 99, 312
CfoI GCGC 1 cut(s) 350
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 95
ClaI ATCGAT 2 cut(s) 369, 505
Csp6I GTAC 2 cut(s) 108, 157
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 2 cut(s) 345, 494
CviQI GTAC 2 cut(s) 108, 157
DdeI CTNAG 2 cut(s) 279, 288
DpnI GATC 6 cut(s) 143, 357, 368, 372, 504, 508
DpnII GATC 6 cut(s) 141, 355, 366, 370, 502, 506
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 2 cut(s) 263, 327
EarI CTCTTC 2 cut(s) 263, 327
Eco24I GRGCYC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 280
FaeI CATG 2 cut(s) 348, 497
FaiI YATR 5 cut(s) 346, 457, 495, 517, 521
FatI CATG 2 cut(s) 344, 493
FauI CCCGC 1 cut(s) 187
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 4 cut(s) 247, 250, 305, 308
FokI GGATG 2 cut(s) 233, 395
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 4 cut(s) 247, 250, 305, 308
GlaI GCGC 1 cut(s) 349
GluI GCNGC 4 cut(s) 247, 250, 305, 308
GsaI CCCAGC 1 cut(s) 277
HaeIII GGCC 2 cut(s) 97, 236
HapII CCGG 6 cut(s) 59, 72, 98, 119, 164, 380
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 401
Hin1II CATG 2 cut(s) 348, 497
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 3 cut(s) 78, 90, 386
HpaII CCGG 6 cut(s) 59, 72, 98, 119, 164, 380
HphI GGTGA 2 cut(s) 209, 451
Hpy166II GTNNAC 2 cut(s) 36, 532
Hpy188I TCNGA 1 cut(s) 337
Hpy8I GTNNAC 2 cut(s) 36, 532
Hpy99I CGWCG 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 527
HpyCH4IV ACGT 2 cut(s) 159, 401
HpyCH4V TGCA 3 cut(s) 126, 307, 532
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 233, 347
HpyF3I CTNAG 2 cut(s) 279, 288
HpySE526I ACGT 2 cut(s) 159, 401
Hsp92I GRCGYC 1 cut(s) 401
Hsp92II CATG 2 cut(s) 348, 497
HspAI GCGC 1 cut(s) 348
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Kzo9I GATC 6 cut(s) 141, 355, 366, 370, 502, 506
LguI GCTCTTC 2 cut(s) 263, 327
LmnI GCTCC 3 cut(s) 61, 191, 224
Lsp1109I GCAGC 2 cut(s) 291, 319
LweI GCATC 2 cut(s) 406, 436
MaeII ACGT 2 cut(s) 159, 401
MaeIII GTNAC 1 cut(s) 229
MalI GATC 6 cut(s) 143, 357, 368, 372, 504, 508
MbiI CCGCTC 1 cut(s) 194
MboI GATC 6 cut(s) 141, 355, 366, 370, 502, 506
MboII GAAGA 4 cut(s) 249, 252, 280, 314
MhlI GDGCHC 2 cut(s) 280, 534
MluCI AATT 2 cut(s) 200, 489
MnlI CCTC 4 cut(s) 34, 122, 283, 331
MroNI GCCGGC 1 cut(s) 97
MspA1I CMGCKG 2 cut(s) 304, 310
MspI CCGG 6 cut(s) 59, 72, 98, 119, 164, 380
MspR9I CCNGG 3 cut(s) 73, 120, 397
MvaI CCWGG 1 cut(s) 397
MwoI GCNNNNNNNGC 3 cut(s) 94, 233, 347
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 2 cut(s) 73, 120
NdeII GATC 6 cut(s) 141, 355, 366, 370, 502, 506
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 2 cut(s) 348, 497
NlaIV GGNNCC 1 cut(s) 63
NspI RCATGY 1 cut(s) 348
NspV TTCGAA 1 cut(s) 205
PciSI GCTCTTC 2 cut(s) 263, 327
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 3 cut(s) 78, 90, 386
PfoI TCCNGGA 1 cut(s) 395
PkrI GCNGC 4 cut(s) 248, 251, 306, 309
Ple19I CGATCG 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 95
PstI CTGCAG 1 cut(s) 309
PvuI CGATCG 1 cut(s) 144
PvuII CAGCTG 2 cut(s) 304, 310
RsaI GTAC 2 cut(s) 109, 158
RsaNI GTAC 2 cut(s) 108, 157
SalI GTCGAC 1 cut(s) 34
SapI GCTCTTC 2 cut(s) 263, 327
SatI GCNGC 4 cut(s) 247, 250, 305, 308
Sau3AI GATC 6 cut(s) 141, 355, 366, 370, 502, 506
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 73, 120, 397
SduI GDGCHC 2 cut(s) 280, 534
SfaNI GCATC 2 cut(s) 406, 436
SfcI CTRYAG 1 cut(s) 305
SfuI TTCGAA 1 cut(s) 205
Sse9I AATT 2 cut(s) 200, 489
SsiI CCGC 4 cut(s) 194, 246, 249, 252
StyD4I CCNGG 3 cut(s) 71, 118, 395
TaaI ACNGT 1 cut(s) 527
TaiI ACGT 2 cut(s) 162, 404
TaqI TCGA 7 cut(s) 35, 47, 136, 144, 205, 369, 505
TasI AATT 2 cut(s) 200, 489
TauI GCSGC 2 cut(s) 249, 252
TfiI GAWTC 3 cut(s) 78, 90, 386
TscAI CASTG 2 cut(s) 244, 381
TseI GCWGC 2 cut(s) 304, 307
TspDTI ATGAA 4 cut(s) 224, 321, 399, 482
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 2 cut(s) 244, 381
VneI GTGCAC 1 cut(s) 530
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 35
ZraI GACGTC 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.