Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1607373 .. 1607822

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGACTTCCACCTTGAGCAATGGAGAACCCAGCAGCATGAGTCAGAGGAACAACATTCTGCAAAGATACCAAAACTTGACCTTGATCCGCTTCAAAACGCAGAGCTTCCATCTGCTGCTGGGTATGCTCTCCCTCTGTTTGTTCCTGAACCCAACACCAAAATCCTGTCAGCAGCATTTTCTGAATCCTCACCTGCCACTTCCAGATTTCCCAGGGAAGCTATTTCAGCTTGTCACAGTGGCAGGAGCTGGAGCTGCAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008285 GO:0009605 GO:0009607 GO:0009624 GO:0022622 GO:0032501 GO:0032502 GO:0042127 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048580 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0061062 GO:0065007 GO:0097159 GO:0099402 GO:1901363 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

89

Amino Acids

9.85

Weight (kDa)

5.72

Isoelectric Point (pI)

73.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	5 cut(s)	106, 221, 230, 249, 255
AluI	AGCT	5 cut(s)	106, 221, 230, 249, 255
AlwI	GGATC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	249
ApeKI	GCWGC	4 cut(s)	34, 116, 173, 255
AsuHPI	GGTGA	1 cut(s)	183
BbvI	GCAGC	4 cut(s)	46, 103, 185, 242
BccI	CCATC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	214
BfmI	CTRYAG	1 cut(s)	256
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	4 cut(s)	35, 117, 174, 256
BlsI	GCNGC	4 cut(s)	36, 118, 175, 257
Bme1390I	CCNGG	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	212, 213
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	212, 213
BseMI	GCAATG	1 cut(s)	26
BseXI	GCAGC	4 cut(s)	46, 103, 185, 242
BseYI	CCCAGC	2 cut(s)	30, 119
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	89
BspMAI	CTGCAG	1 cut(s)	260
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	212, 213
BssMI	GATC	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 227, 255
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	4 cut(s)	46, 103, 185, 242
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	260
CaiI	CAGNNNCTG	1 cut(s)	249
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	6 cut(s)	106, 221, 230, 249, 255, 262
CviKI_1	RGCY	6 cut(s)	106, 221, 230, 249, 255, 262
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	212
FaeI	CATG	1 cut(s)	41
FaiI	YATR	2 cut(s)	39, 126
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	4 cut(s)	35, 117, 174, 256
Fsp4HI	GCNGC	4 cut(s)	35, 117, 174, 256
GluI	GCNGC	4 cut(s)	35, 117, 174, 256
GsaI	CCCAGC	2 cut(s)	34, 123
Hin1II	CATG	1 cut(s)	41
HinfI	GANTC	2 cut(s)	41, 185
HphI	GGTGA	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	46, 184
Hpy188III	TCNNGA	2 cut(s)	146, 204
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	2 cut(s)	62, 258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 227, 255
Hsp92II	CATG	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	246, 252
Lsp1109I	GCAGC	4 cut(s)	46, 103, 185, 242
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	40, 144, 199
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	125, 227, 255
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	233
PaqCI	CACCTGC	1 cut(s)	202
PasI	CCCWGGG	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	4 cut(s)	36, 118, 175, 257
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	212
PspFI	CCCAGC	2 cut(s)	30, 119
PspGI	CCWGG	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	260
PstNI	CAGNNNCTG	1 cut(s)	249
SatI	GCNGC	4 cut(s)	35, 117, 174, 256
Sau3AI	GATC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	8 cut(s)	15, 84, 108, 196, 223, 232, 251, 257
SfcI	CTRYAG	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SsiI	CCGC	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	185
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	4 cut(s)	34, 116, 173, 255
Tsp45I	GTSAC	1 cut(s)	233
TspRI	CASTG	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.