Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1834888 .. 1835221

Gene Structure 334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGTCCGGGGATATCTTCGGAAAAGCTGGAAATCAACGGCTCCGCCGGTTTCTGTCACCCCGATCACCAATGCGACCCCGGCTACGAACAAGAGCTTGTTTTCCATGGGGAACGACGGAACGTGGCCGATTCGTTGCCCCAAAACCACCACTGCTGCTAGTAATGGCTCAGTGAAAAGCGGTGGTACAAATTGTGGTGTTTCTCGGAATTTTGGGAGTTTCTTAGTTTTATGGCGGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0034622 GO:0035082 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0060271 GO:0065003 GO:0070286 GO:0070925 GO:0071840 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_8

Protein Analysis

81

Amino Acids

8.52

Weight (kDa)

10.63

Isoelectric Point (pI)

17.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	44, 180, 235
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	1 cut(s)	187
AluBI	AGCT	2 cut(s)	27, 96
AluI	AGCT	2 cut(s)	27, 96
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	8, 80
AsuHPI	GGTGA	2 cut(s)	49, 58
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	54
BcnI	CCSGG	2 cut(s)	8, 80
BfaI	CTAG	1 cut(s)	159
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	2 cut(s)	8, 80
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	2 cut(s)	8, 80
BpuMI	CCSGG	2 cut(s)	8, 80
BsaJI	CCNNGG	3 cut(s)	7, 78, 105
Bse118I	RCCGGY	1 cut(s)	46
BseDI	CCNNGG	3 cut(s)	7, 78, 105
BseMII	CTCAG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	142
BshFI	GGCC	1 cut(s)	127
BsiSI	CCGG	3 cut(s)	7, 47, 80
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	63
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	3 cut(s)	44, 180, 235
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	7, 78, 105
BssMI	GATC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	169, 223
BstDSI	CCRYGG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	6, 78
BstV1I	GCAGC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 177
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	6 cut(s)	27, 41, 83, 96, 127, 168
CviKI_1	RGCY	6 cut(s)	27, 41, 83, 96, 127, 168
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	2 cut(s)	169, 223
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	105
Eco32I	GATATC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	2 cut(s)	107, 232
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	3 cut(s)	7, 47, 80
Hin1II	CATG	1 cut(s)	109
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	3 cut(s)	7, 47, 80
HphI	GGTGA	2 cut(s)	49, 58
Hpy188I	TCNGA	2 cut(s)	21, 207
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	169, 223
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	4 cut(s)	13, 20, 60, 93
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	1 cut(s)	8
MluCI	AATT	2 cut(s)	190, 208
MseI	TTAA	1 cut(s)	241
MspI	CCGG	3 cut(s)	7, 47, 80
MspR9I	CCNGG	2 cut(s)	8, 80
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	2 cut(s)	8, 80
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	241
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	8, 80
SetI	ASST	3 cut(s)	29, 98, 125
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	190, 208
SsiI	CCGC	3 cut(s)	44, 180, 235
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	6, 78
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	1 cut(s)	125
TasI	AATT	2 cut(s)	190, 208
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	241
Tru9I	TTAA	1 cut(s)	241
TscAI	CASTG	2 cut(s)	157, 177
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	157, 177
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	208
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.