pycom12g03030

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
2732250 .. 2732727
478 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGGGTCGCGTCCGCACAAAAACAGTGAAGAAATCCTCCCGCCAGGTCATCGAGCGCTACTACTCGCGCATGACCCTGGACTTCCACACCAACAAGAAGATCCTCGAGGAAGTCGCCATCATCCCCTCCAAGCGCCTCCGCAACAAGATTGCCGGATTCTCCACCCACCTGATGAAGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCTGAGGAGTCCGCTATCAAGATCGACGAGATCTCCGTCGACAAGGAAACCATCGACATGCTCTCTGCTCTGGGCATGGCCGACATGCCCGGCGTCAAGCGGGTCGACCCGGAAGCACAGTCTCAGAATCTGGGGTTCGTGCGTGGTGGACCCAGGAGGTACTGAAACGGGTTTAGAGAATGATCGGGTTTTGATGCTATACTACATTTGGTTTTTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17e

Protein Analysis

144

Amino Acids

16.32

Weight (kDa)

10.8

Isoelectric Point (pI)

64.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17e PF00833 1 - 67 6.7e-33 Ribosomal S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 104
AccI GTMKAC 2 cut(s) 248, 314
AccII CGCG 3 cut(s) 9, 67, 188
AciI CCGC 6 cut(s) 13, 40, 139, 195, 221, 309
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 1 cut(s) 370
AfeI AGCGCT 1 cut(s) 56
AjnI CCWGG 3 cut(s) 42, 75, 361
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 1 cut(s) 94
AlwNI CAGNNNCTG 1 cut(s) 339
Ama87I CYCGRG 1 cut(s) 104
Aor51HI AGCGCT 1 cut(s) 56
AoxI GGCC 1 cut(s) 287
AspLEI GCGC 5 cut(s) 57, 69, 135, 188, 194
AspS9I GGNCC 1 cut(s) 358
AsuC2I CCSGG 2 cut(s) 299, 319
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 358
AxyI CCTNAGG 1 cut(s) 212
BccI CCATC 2 cut(s) 125, 268
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BciT130I CCWGG 3 cut(s) 44, 77, 363
BcnI CCSGG 2 cut(s) 299, 319
BcoDI GTCTC 1 cut(s) 335
BfoI RGCGCY 3 cut(s) 58, 136, 195
BglII AGATCT 1 cut(s) 239
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 5 cut(s) 44, 77, 299, 319, 363
Bme18I GGWCC 1 cut(s) 358
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 5 cut(s) 44, 77, 299, 319, 363
BmsI GCATC 1 cut(s) 393
BpuMI CCSGG 2 cut(s) 299, 319
BsaHI GRCGYC 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 75, 361
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bse21I CCTNAGG 1 cut(s) 212
BseBI CCWGG 3 cut(s) 44, 77, 363
BseDI CCNNGG 2 cut(s) 75, 361
BseGI GGATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 203, 346
BseRI GAGGAG 3 cut(s) 193, 196, 229
Bsh1236I CGCG 3 cut(s) 9, 67, 188
BshFI GGCC 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 3 cut(s) 153, 299, 319
BslFI GGGAC 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 104
Bsp143I GATC 4 cut(s) 99, 230, 239, 391
BspACI CCGC 6 cut(s) 13, 40, 139, 195, 221, 309
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 2 cut(s) 204, 345
BspFNI CGCG 3 cut(s) 9, 67, 188
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 75, 361
BssMI GATC 4 cut(s) 99, 230, 239, 391
BssNI GRCGYC 1 cut(s) 302
Bst2UI CCWGG 3 cut(s) 44, 77, 363
Bst4CI ACNGT 2 cut(s) 25, 329
Bst6I CTCTTC 1 cut(s) 170
BstACI GRCGYC 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 212, 332
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 3 cut(s) 9, 67, 188
BstH2I RGCGCY 3 cut(s) 58, 136, 195
BstHHI GCGC 5 cut(s) 57, 69, 135, 188, 194
BstKTI GATC 4 cut(s) 102, 233, 242, 394
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 4 cut(s) 99, 230, 239, 391
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 3 cut(s) 44, 77, 363
BstNSI RCATGY 2 cut(s) 270, 297
BstSCI CCNGG 5 cut(s) 42, 75, 297, 317, 361
BstUI CGCG 3 cut(s) 9, 67, 188
BstX2I RGATCY 2 cut(s) 99, 239
BstYI RGATCY 2 cut(s) 99, 239
Bsu36I CCTNAGG 1 cut(s) 212
BsuRI GGCC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 339
CfoI GCGC 5 cut(s) 57, 69, 135, 188, 194
Cfr13I GGNCC 1 cut(s) 358
CseI GACGC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 369
CviAII CATG 5 cut(s) 70, 198, 267, 285, 294
CviJI RGCY 1 cut(s) 289
CviKI_1 RGCY 1 cut(s) 289
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 212, 332
DpnI GATC 4 cut(s) 101, 232, 241, 393
DpnII GATC 4 cut(s) 99, 230, 239, 391
EaeI YGGCCR 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 358
Eco47III AGCGCT 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 104
EcoRII CCWGG 3 cut(s) 42, 75, 361
FaeI CATG 5 cut(s) 73, 201, 270, 288, 297
FaiI YATR 6 cut(s) 71, 199, 268, 286, 295, 409
FaqI GGGAC 1 cut(s) 193
FatI CATG 5 cut(s) 69, 197, 266, 284, 293
FauI CCCGC 2 cut(s) 47, 302
FblI GTMKAC 2 cut(s) 248, 314
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 195
GlaI GCGC 5 cut(s) 56, 68, 134, 187, 193
GluI GCNGC 1 cut(s) 195
HaeII RGCGCY 3 cut(s) 58, 136, 195
HaeIII GGCC 1 cut(s) 289
HapII CCGG 3 cut(s) 153, 299, 319
HgaI GACGC 1 cut(s) 291
HhaI GCGC 5 cut(s) 57, 69, 135, 188, 194
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 5 cut(s) 73, 201, 270, 288, 297
Hin6I GCGC 5 cut(s) 55, 67, 133, 186, 192
HinP1I GCGC 5 cut(s) 55, 67, 133, 186, 192
HincII GTYRAC 2 cut(s) 249, 315
HindII GTYRAC 2 cut(s) 249, 315
HinfI GANTC 3 cut(s) 156, 217, 336
HpaII CCGG 3 cut(s) 153, 299, 319
Hpy166II GTNNAC 3 cut(s) 249, 315, 358
Hpy188I TCNGA 1 cut(s) 335
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 3 cut(s) 249, 315, 358
Hpy99I CGWCG 2 cut(s) 238, 250
HpyCH4III ACNGT 2 cut(s) 25, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 212, 332
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 5 cut(s) 73, 201, 270, 288, 297
HspAI GCGC 5 cut(s) 55, 67, 133, 186, 192
Kzo9I GATC 4 cut(s) 99, 230, 239, 391
LmnI GCTCC 1 cut(s) 183
LweI GCATC 1 cut(s) 393
MalI GATC 4 cut(s) 101, 232, 241, 393
MboI GATC 4 cut(s) 99, 230, 239, 391
MboII GAAGA 3 cut(s) 40, 109, 187
MflI RGATCY 2 cut(s) 99, 239
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 9 cut(s) 46, 100, 113, 136, 146, 171, 174, 207, 359
MslI CAYNNNNRTG 1 cut(s) 265
MspI CCGG 3 cut(s) 153, 299, 319
MspR9I CCNGG 5 cut(s) 44, 77, 299, 319, 363
MvaI CCWGG 3 cut(s) 44, 77, 363
MvnI CGCG 3 cut(s) 9, 67, 188
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 2 cut(s) 299, 319
NdeII GATC 4 cut(s) 99, 230, 239, 391
NlaIII CATG 5 cut(s) 73, 201, 270, 288, 297
NlaIV GGNNCC 1 cut(s) 360
NspI RCATGY 2 cut(s) 270, 297
PaeR7I CTCGAG 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PfeI GAWTC 2 cut(s) 156, 336
PflFI GACNNNGTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
Psp6I CCWGG 3 cut(s) 42, 75, 361
PspGI CCWGG 3 cut(s) 42, 75, 361
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 358
PspXI VCTCGAGB 1 cut(s) 104
PstNI CAGNNNCTG 1 cut(s) 339
PsuI RGATCY 2 cut(s) 99, 239
PsyI GACNNNGTC 1 cut(s) 205
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 265
SalI GTCGAC 2 cut(s) 247, 313
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 4 cut(s) 99, 230, 239, 391
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 5 cut(s) 44, 77, 299, 319, 363
SetI ASST 3 cut(s) 48, 171, 370
SfaNI GCATC 1 cut(s) 393
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 1 cut(s) 358
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SsiI CCGC 6 cut(s) 13, 40, 139, 195, 221, 309
StyD4I CCNGG 5 cut(s) 42, 75, 297, 317, 361
TaaI ACNGT 2 cut(s) 25, 329
TaqI TCGA 6 cut(s) 51, 105, 233, 248, 263, 314
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 2 cut(s) 156, 336
TscAI CASTG 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 1 cut(s) 30
Tth111I GACNNNGTC 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 358
XceI RCATGY 2 cut(s) 270, 297
XhoI CTCGAG 1 cut(s) 104
XmiI GTMKAC 2 cut(s) 248, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.