pycom12g03930

Prolycopene isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
3812729 .. 3815651
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1080 bp
ATGCCGGTAATTCCTGATCCGAATACCGTCCATTACCATCTACCCGATAATCTTTCCGTCCTAGTGCACAGAGAATACAGTGAATTTATTTCCGAACTTACTAGTAAATTTCCCCCTGAAAAGCAAGGGAATCTGAAATTCTATGGTGTATGTTGGAAGGTCTGTTCTTTTCTTTTTTCATATAATTTGCAAGTTGAGTGGGAGTCCCTTTGGGATATTTTCATTACTTCCTACTATTTGCCTCAAAATGCTGGGGATATAGCTCGCAAATACATTCAGGATCCCCAACTGTTGTCTTTCATAGATGCGGAGTGTTTTATTGTGAGTACACCAATGATCAATGCAAGCATGGTTATGTGTGACAGGCATTATGGTGGGATTAACTACCTTGTTGGTGGTGTTGGTGGAATTGCAAAGTCCTTAGCAAAAGGTCTGGTAGACCAGGGCAGTGAGATACTTTACAAGGCCAATGTTACTAACATCATAGTTGATCAGGGCAGAGCGGTGATAAGGCTTTCAGACAGGAGGGGATTCTTTGCAAAAACCATAATATCAAATGCTACAAGATGGAATACCTTTGGCCCCATTTCTCTTTCCATTCACATGGGGGTGAAGGTTGAGGTTCTGCCACCAGAAACAGATTGCCACCATTTTGTGCTTGAGTATATTTTAAGCATTCCAACTGTTCTTGATTCATCATTGGCTCCAGAAGGACGCCATATTCTTCACATATTTACAACCTCTTCCATAGAGGACTGGGTGGTAACCATCTGTTGTCAAGATGAAATCATTCGCAGATTAGAGAATAAATTATTTCCAGGGCCCAAATCGTCCATCGTTTTTAAGGAGGTGGGAACGCCAAAGACGCACAGGCGGTACCTGGCTCGTGACAAGGTCGGAATGCCATTCAATACAACAGCTATGGATGGTCTTTACTGTGTTGGTGGTAGCTGCTTTCCAGGACAAGGAGTTATAGCCGTATCCTTCTCAGGAGTAATGTGTGCTCATCGAGTAGCTGCTGATATAGGTATTTTCTCAGTGCTTTTCTTTCCCTTTTTTTGGGTTAGTTTTGTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
Amino_oxidase

Protein Analysis

360

Amino Acids

40.24

Weight (kDa)

6.41

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 876
AccB1I GGYRCC 1 cut(s) 876
AccBSI CCGCTC 1 cut(s) 503
AccI GTMKAC 1 cut(s) 438
AciI CCGC 3 cut(s) 308, 503, 874
AclWI GGATC 3 cut(s) 11, 275, 288
AcsI RAATTY 3 cut(s) 83, 107, 137
AcyI GRCGYC 1 cut(s) 715
AfaI GTAC 2 cut(s) 328, 878
AfiI CCNNNNNNNGG 2 cut(s) 965, 1059
AgsI TTSAA 1 cut(s) 910
AhlI ACTAGT 1 cut(s) 101
AjnI CCWGG 4 cut(s) 441, 817, 879, 958
AloI GAACNNNNNNTCC 2 cut(s) 148, 180
AluBI AGCT 4 cut(s) 263, 920, 951, 1016
AluI AGCT 4 cut(s) 263, 920, 951, 1016
Alw21I GWGCWC 2 cut(s) 69, 1006
Alw44I GTGCAC 1 cut(s) 65
AlwI GGATC 3 cut(s) 11, 275, 288
AoxI GGCC 3 cut(s) 465, 580, 821
ApaI GGGCCC 1 cut(s) 825
ApaLI GTGCAC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 951, 1016
ApoI RAATTY 3 cut(s) 83, 107, 137
Asp700I GAANNNNTTC 1 cut(s) 789
Asp718I GGTACC 1 cut(s) 876
AspS9I GGNCC 3 cut(s) 581, 821, 822
AsuHPI GGTGA 2 cut(s) 517, 622
BaeGI GKGCMC 2 cut(s) 69, 825
BamHI GGATCC 1 cut(s) 280
BanI GGYRCC 1 cut(s) 876
BanII GRGCYC 1 cut(s) 825
BauI CACGAG 1 cut(s) 885
Bbv12I GWGCWC 2 cut(s) 69, 1006
BbvI GCAGC 2 cut(s) 938, 1003
BccI CCATC 5 cut(s) 45, 561, 776, 842, 920
BceAI ACGGC 1 cut(s) 962
BciT130I CCWGG 4 cut(s) 443, 819, 881, 960
BciVI GTATCC 1 cut(s) 991
BclI TGATCA 2 cut(s) 336, 490
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 2 cut(s) 62, 102
BfuI GTATCC 1 cut(s) 991
BisI GCNGC 2 cut(s) 952, 1017
BlsI GCNGC 2 cut(s) 953, 1018
Bme1390I CCNGG 4 cut(s) 443, 819, 881, 960
BmgT120I GGNCC 3 cut(s) 581, 821, 822
BmiI GGNNCC 5 cut(s) 282, 583, 705, 823, 878
BmrFI CCNGG 4 cut(s) 443, 819, 881, 960
BmrI ACTGGG 1 cut(s) 766
BmsI GCATC 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 766
BpmI CTGGAG 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 421
BpuEI CTTGAG 1 cut(s) 680
BsaHI GRCGYC 1 cut(s) 715
BsaJI CCNNGG 2 cut(s) 442, 818
Bsc4I CCNNNNNNNGG 2 cut(s) 965, 1059
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 761
BseBI CCWGG 4 cut(s) 443, 819, 881, 960
BseDI CCNNGG 2 cut(s) 442, 818
BseGI GGATG 1 cut(s) 931
BseLI CCNNNNNNNGG 2 cut(s) 965, 1059
BseMII CTCAG 2 cut(s) 1002, 1050
BseNI ACTGG 1 cut(s) 761
BseSI GKGCMC 2 cut(s) 69, 825
BseXI GCAGC 2 cut(s) 938, 1003
BseYI CCCAGC 1 cut(s) 251
BshFI GGCC 3 cut(s) 467, 582, 823
BshNI GGYRCC 1 cut(s) 876
BsiHKAI GWGCWC 2 cut(s) 69, 1006
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 2 cut(s) 965, 1059
BsmFI GGGAC 1 cut(s) 190
BsmI GAATGC 2 cut(s) 675, 906
BsnI GGCC 3 cut(s) 467, 582, 823
Bsp120I GGGCCC 1 cut(s) 821
Bsp1286I GDGCHC 3 cut(s) 69, 825, 1006
Bsp143I GATC 4 cut(s) 16, 280, 336, 490
BspACI CCGC 3 cut(s) 308, 503, 874
BspANI GGCC 3 cut(s) 467, 582, 823
BspCNI CTCAG 2 cut(s) 1001, 1049
BspLI GGNNCC 5 cut(s) 282, 583, 705, 823, 878
BspPI GGATC 3 cut(s) 11, 275, 288
BspT107I GGYRCC 1 cut(s) 876
BsrBI CCGCTC 1 cut(s) 503
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 761
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 442, 818
BssMI GATC 4 cut(s) 16, 280, 336, 490
BssNI GRCGYC 1 cut(s) 715
BssSI CACGAG 1 cut(s) 885
Bst2BI CACGAG 1 cut(s) 885
Bst2UI CCWGG 4 cut(s) 443, 819, 881, 960
Bst4CI ACNGT 5 cut(s) 28, 80, 291, 685, 938
Bst6I CTCTTC 1 cut(s) 748
BstACI GRCGYC 1 cut(s) 715
BstC8I GCNNGC 2 cut(s) 265, 346
BstDEI CTNAG 3 cut(s) 421, 988, 1036
BstEII GGTNACC 1 cut(s) 763
BstF5I GGATG 1 cut(s) 931
BstKTI GATC 4 cut(s) 19, 283, 339, 493
BstMBI GATC 4 cut(s) 16, 280, 336, 490
BstMWI GCNNNNNNNGC 1 cut(s) 865
BstNI CCWGG 4 cut(s) 443, 819, 881, 960
BstPI GGTNACC 1 cut(s) 763
BstSCI CCNGG 4 cut(s) 441, 817, 879, 958
BstSLI GKGCMC 2 cut(s) 69, 825
BstV1I GCAGC 2 cut(s) 938, 1003
BstX2I RGATCY 1 cut(s) 280
BstXI CCANNNNNNTGG 1 cut(s) 604
BstYI RGATCY 1 cut(s) 280
BsuI GTATCC 1 cut(s) 991
BsuRI GGCC 3 cut(s) 467, 582, 823
BtsCI GGATG 1 cut(s) 931
BtsI GCAGTG 1 cut(s) 454
BtsIMutI CAGTG 3 cut(s) 85, 454, 1044
Cac8I GCNNGC 2 cut(s) 265, 346
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 3 cut(s) 581, 821, 822
CseI GACGC 2 cut(s) 723, 874
Csp6I GTAC 2 cut(s) 327, 877
CspCI CAANNNNNGTGG 2 cut(s) 179, 214
CviAII CATG 2 cut(s) 349, 604
CviQI GTAC 2 cut(s) 327, 877
DdeI CTNAG 3 cut(s) 421, 988, 1036
DpnI GATC 4 cut(s) 18, 282, 338, 492
DpnII GATC 4 cut(s) 16, 280, 336, 490
Eam1104I CTCTTC 1 cut(s) 748
EarI CTCTTC 1 cut(s) 748
Eco24I GRGCYC 1 cut(s) 825
Eco91I GGTNACC 1 cut(s) 763
EcoO109I RGGNCCY 1 cut(s) 821
EcoO65I GGTNACC 1 cut(s) 763
EcoRII CCWGG 4 cut(s) 441, 817, 879, 958
EcoT38I GRGCYC 1 cut(s) 825
FaeI CATG 2 cut(s) 352, 607
FaqI GGGAC 1 cut(s) 190
FatI CATG 2 cut(s) 348, 603
FbaI TGATCA 2 cut(s) 336, 490
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 952, 1017
FokI GGATG 1 cut(s) 938
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 2 cut(s) 952, 1017
FspBI CTAG 2 cut(s) 62, 102
GluI GCNGC 2 cut(s) 952, 1017
GsaI CCCAGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 3 cut(s) 467, 582, 823
HapII CCGG 1 cut(s) 5
HgaI GACGC 2 cut(s) 723, 874
Hin1I GRCGYC 1 cut(s) 715
Hin1II CATG 2 cut(s) 352, 607
HinfI GANTC 4 cut(s) 130, 203, 531, 692
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 517, 622
Hpy166II GTNNAC 3 cut(s) 67, 329, 439
Hpy188I TCNGA 6 cut(s) 21, 94, 135, 520, 899, 1079
Hpy188III TCNNGA 7 cut(s) 14, 278, 689, 707, 779, 887, 990
Hpy8I GTNNAC 3 cut(s) 67, 329, 439
HpyAV CCTTC 4 cut(s) 151, 607, 704, 994
HpyCH4III ACNGT 5 cut(s) 28, 80, 291, 685, 938
HpyCH4V TGCA 5 cut(s) 67, 190, 344, 413, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 865
HpyF3I CTNAG 3 cut(s) 421, 988, 1036
Hsp92I GRCGYC 1 cut(s) 715
Hsp92II CATG 2 cut(s) 352, 607
KpnI GGTACC 1 cut(s) 880
Ksp22I TGATCA 2 cut(s) 336, 490
Kzo9I GATC 4 cut(s) 16, 280, 336, 490
LmnI GCTCC 1 cut(s) 709
Lsp1109I GCAGC 2 cut(s) 938, 1003
LweI GCATC 1 cut(s) 295
MaeI CTAG 2 cut(s) 62, 102
MaeIII GTNAC 4 cut(s) 359, 472, 763, 887
MalI GATC 4 cut(s) 18, 282, 338, 492
MbiI CCGCTC 1 cut(s) 503
MboI GATC 4 cut(s) 16, 280, 336, 490
MboII GAAGA 2 cut(s) 716, 735
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 3 cut(s) 69, 825, 1006
MluCI AATT 7 cut(s) 9, 83, 107, 137, 184, 408, 809
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 3 cut(s) 134, 704, 877
MnlI CCTC 6 cut(s) 252, 519, 613, 745, 751, 841
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 3 cut(s) 381, 671, 843
MslI CAYNNNNRTG 4 cut(s) 353, 372, 602, 608
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 4 cut(s) 443, 819, 881, 960
Mva1269I GAATGC 2 cut(s) 675, 906
MvaI CCWGG 4 cut(s) 443, 819, 881, 960
MwoI GCNNNNNNNGC 1 cut(s) 865
NdeII GATC 4 cut(s) 16, 280, 336, 490
NlaIII CATG 2 cut(s) 352, 607
NlaIV GGNNCC 5 cut(s) 282, 583, 705, 823, 878
NmuCI GTSAC 2 cut(s) 359, 887
PctI GAATGC 2 cut(s) 675, 906
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 3 cut(s) 130, 531, 692
PflFI GACNNNGTC 1 cut(s) 893
PfoI TCCNGGA 1 cut(s) 958
PkrI GCNGC 2 cut(s) 953, 1018
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp6I CCWGG 4 cut(s) 441, 817, 879, 958
PspEI GGTNACC 1 cut(s) 763
PspFI CCCAGC 1 cut(s) 251
PspGI CCWGG 4 cut(s) 441, 817, 879, 958
PspN4I GGNNCC 5 cut(s) 282, 583, 705, 823, 878
PspOMI GGGCCC 1 cut(s) 821
PspPI GGNCC 3 cut(s) 581, 821, 822
PsuI RGATCY 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 893
RsaI GTAC 2 cut(s) 328, 878
RsaNI GTAC 2 cut(s) 327, 877
RseI CAYNNNNRTG 4 cut(s) 353, 372, 602, 608
SaqAI TTAA 3 cut(s) 381, 671, 843
SatI GCNGC 2 cut(s) 952, 1017
Sau3AI GATC 4 cut(s) 16, 280, 336, 490
Sau96I GGNCC 3 cut(s) 581, 821, 822
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 4 cut(s) 443, 819, 881, 960
SduI GDGCHC 3 cut(s) 69, 825, 1006
SfaNI GCATC 1 cut(s) 295
SmiMI CAYNNNNRTG 4 cut(s) 353, 372, 602, 608
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 7 cut(s) 9, 83, 107, 137, 184, 408, 809
SsiI CCGC 3 cut(s) 308, 503, 874
SspMI CTAG 2 cut(s) 62, 102
StyD4I CCNGG 4 cut(s) 441, 817, 879, 958
TaaI ACNGT 5 cut(s) 28, 80, 291, 685, 938
TaqI TCGA 1 cut(s) 1009
TasI AATT 7 cut(s) 9, 83, 107, 137, 184, 408, 809
TatI WGTACW 1 cut(s) 326
TfiI GAWTC 3 cut(s) 130, 531, 692
Tru1I TTAA 3 cut(s) 381, 671, 843
Tru9I TTAA 3 cut(s) 381, 671, 843
TscAI CASTG 3 cut(s) 85, 454, 1044
TseFI GTSAC 2 cut(s) 359, 887
TseI GCWGC 2 cut(s) 951, 1016
Tsp45I GTSAC 2 cut(s) 359, 887
TspDTI ATGAA 5 cut(s) 168, 211, 289, 684, 798
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 3 cut(s) 85, 454, 1044
Tth111I GACNNNGTC 1 cut(s) 893
VneI GTGCAC 1 cut(s) 65
XapI RAATTY 3 cut(s) 83, 107, 137
XmiI GTMKAC 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 2 cut(s) 62, 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.