Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4100803 .. 4101247

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTTGTATCGGCGGAGAATGGGAGCAAACAGTGCTCGCCATGGCAAATAGCTGGATCATTTCAGCTTGATCGGAACCATACTGCCAATGTTCTAAATCGTAAGAGAGGTATACGAGTTCAAAGGACTGGGATTAGAGGAAGAATTAGGGTTTTGGACCGAAGGAGAGATGATCGGACAAGACGATCCAGTTGGTGGCGAGTCAAATTGAGCAGCCATATCTTGAAGAGATCAAGATTCAAGAGAGATCGAAGACAAAAAGGCAAAGAATCAGAGAGAAGCGATCAAGAAGCGATCGATTTGTCGAGCGGAAGAGAAGGTCGGTGCTGGGAAGAAGAATGGCGTGATACCATAAAGAAACAGAAAACTTTCTCTGTAAGTTTTCTGATTGTATTGAATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0009506 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

135

Amino Acids

16.03

Weight (kDa)

11.36

Isoelectric Point (pI)

60.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccBSI	CCGCTC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	112
AciI	CCGC	2 cut(s)	14, 309
AclWI	GGATC	2 cut(s)	64, 180
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	122, 226, 241, 397
AluBI	AGCT	2 cut(s)	53, 67
AluI	AGCT	2 cut(s)	53, 67
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	64, 180
ApeKI	GCWGC	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	225
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	77
BmrI	ACTGGG	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	259
Bsa29I	ATCGAT	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse1I	ACTGG	2 cut(s)	133, 189
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	133, 189
BseXI	GCAGC	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	327
Bsh1285I	CGRYCG	1 cut(s)	297
BshVI	ATCGAT	1 cut(s)	297
BsiEI	CGRYCG	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	8 cut(s)	56, 70, 172, 185, 230, 247, 283, 294
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	2 cut(s)	14, 309
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	77
BspPI	GGATC	2 cut(s)	64, 180
BsrBI	CCGCTC	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	133, 189
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	8 cut(s)	56, 70, 172, 185, 230, 247, 283, 294
BssNAI	GTATAC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	41
Bst1107I	GTATAC	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	2 cut(s)	221, 307
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	41
BstKTI	GATC	8 cut(s)	59, 73, 175, 188, 233, 250, 286, 297
BstMBI	GATC	8 cut(s)	56, 70, 172, 185, 230, 247, 283, 294
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	259
BstZ17I	GTATAC	1 cut(s)	113
Bsu15I	ATCGAT	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	157
ClaI	ATCGAT	1 cut(s)	297
CviAII	CATG	1 cut(s)	42
CviJI	RGCY	3 cut(s)	53, 67, 216
CviKI_1	RGCY	3 cut(s)	53, 67, 216
DpnI	GATC	8 cut(s)	58, 72, 174, 187, 232, 249, 285, 296
DpnII	GATC	8 cut(s)	56, 70, 172, 185, 230, 247, 283, 294
Eam1104I	CTCTTC	2 cut(s)	221, 307
EarI	CTCTTC	2 cut(s)	221, 307
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	45
FaiI	YATR	5 cut(s)	43, 81, 113, 219, 353
FatI	CATG	1 cut(s)	41
FblI	GTMKAC	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	214
GsaI	CCCAGC	1 cut(s)	331
Hin1II	CATG	1 cut(s)	45
HinfI	GANTC	3 cut(s)	201, 237, 269
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	4 cut(s)	75, 177, 274, 387
Hpy188III	TCNNGA	4 cut(s)	223, 234, 241, 287
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	156, 311
HpyCH4III	ACNGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	45
Kzo9I	GATC	8 cut(s)	56, 70, 172, 185, 230, 247, 283, 294
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	4 cut(s)	39, 114, 202, 313
Lsp1109I	GCAGC	1 cut(s)	225
MalI	GATC	8 cut(s)	58, 72, 174, 187, 232, 249, 285, 296
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	8 cut(s)	56, 70, 172, 185, 230, 247, 283, 294
MboII	GAAGA	6 cut(s)	153, 238, 264, 324, 344, 347
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	144, 206
MlyI	GAGTC	1 cut(s)	210
MnlI	CCTC	2 cut(s)	101, 131
MroXI	GAANNNNTTC	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	33
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	8 cut(s)	56, 70, 172, 185, 230, 247, 283, 294
NlaIII	CATG	1 cut(s)	45
NlaIV	GGNNCC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	237, 269
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	215
Ple19I	CGATCG	1 cut(s)	297
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	157
PvuI	CGATCG	1 cut(s)	297
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	8 cut(s)	56, 70, 172, 185, 230, 247, 283, 294
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	4 cut(s)	55, 69, 112, 322
SinI	GGWCC	1 cut(s)	157
Sse9I	AATT	2 cut(s)	144, 206
SsiI	CCGC	2 cut(s)	14, 309
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	33
TaqI	TCGA	3 cut(s)	250, 297, 305
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	2 cut(s)	144, 206
TfiI	GAWTC	2 cut(s)	237, 269
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	1 cut(s)	213
TspRI	CASTG	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.