Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4104720 .. 4104938

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGCCCACCCGTTGGTCTGCAAGGCCTGGAAATATAAGAGCTCTGTTTATTTCAATTCGATTATTGTCATTACATCAGGCAGCTTTGGACATGGCAGTGATGATGGAGGCAGATGGTGAACAGATGATGATATTGTACACCATCATTCAATACATGATATTGAACGGCAAGGTGAAAAGAATATTTGGGAAGAAGACGAAAAGCTACATATGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

73

Amino Acids

8.33

Weight (kDa)

10.01

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	12
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	3 cut(s)	54, 149, 163
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	41, 83, 204
AluI	AGCT	3 cut(s)	41, 83, 204
Alw21I	GWGCWC	1 cut(s)	43
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	128, 184
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	3 cut(s)	97, 107, 149
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	27
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	92
BshFI	GGCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	12
BsnI	GGCC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	135
BspANI	GGCC	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	27
BstAUI	TGTACA	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	25
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	2 cut(s)	91, 154
CviJI	RGCY	4 cut(s)	25, 41, 83, 204
CviKI_1	RGCY	4 cut(s)	25, 41, 83, 204
CviQI	GTAC	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	43
FaeI	CATG	2 cut(s)	94, 157
FaiI	YATR	5 cut(s)	35, 92, 155, 209, 211
FatI	CATG	2 cut(s)	90, 153
FauNDI	CATATG	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	81
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	94, 157
HphI	GGTGA	2 cut(s)	128, 184
Hpy166II	GTNNAC	2 cut(s)	119, 138
Hpy8I	GTNNAC	2 cut(s)	119, 138
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	94, 157
LpnPI	CCDG	3 cut(s)	12, 39, 62
Lsp1109I	GCAGC	1 cut(s)	92
MboII	GAAGA	2 cut(s)	202, 205
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	1 cut(s)	54
MnlI	CCTC	1 cut(s)	100
MslI	CAYNNNNRTG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	210
NdeI	CATATG	1 cut(s)	209
NlaIII	CATG	2 cut(s)	94, 157
PceI	AGGCCT	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	43
SatI	GCNGC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	4 cut(s)	43, 85, 174, 206
SgeI	CNNG	8 cut(s)	21, 33, 38, 39, 89, 103, 166, 181
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	54
SseBI	AGGCCT	1 cut(s)	25
SspI	AATATT	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	25
TaqI	TCGA	1 cut(s)	58
TasI	AATT	1 cut(s)	54
TatI	WGTACW	1 cut(s)	135
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	1 cut(s)	80
TspRI	CASTG	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.