pycom12g04380

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Reverse (-)
4225555 .. 4226148
594 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGCATGACTATCAGTGTTATTGTGCATGCATTTCATCTATGTCGATAACTTGTCCGTTGATGCAATTTGTCCTCTCATGTTTTAGTTACAAGTTTGACAATGAACGTGTGACGAAAGAGGATGTGAAAAGGGCTTTAGAAGAGCAGTATGGTGGTGAAGAGTTGCAACGGACCATTTCTCGCTTTAATAGTACTTCTTTCAGCCTTACAAAATACTCAAATGCATACATGCTTGTGTATATACGGGACAGTTATAGGGAGAAAATAATATGCAACGTGGACGAGAAAGACATAGCCGAACATCAAAGGGTTGAAAGATGTAATGCACAAGTACACCTCTACACTACTATTAAGGTAAAGCGTTCCAGTATCCGGTTTTCACCATTGCTTGTTCGAATAAGCTAG

Protein Analysis

135

Amino Acids

15.81

Weight (kDa)

8.46

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 193, 333
AfiI CCNNNNNNNGG 1 cut(s) 372
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 1 cut(s) 314
AluBI AGCT 1 cut(s) 402
AluI AGCT 1 cut(s) 402
AspS9I GGNCC 1 cut(s) 171
AsuHPI GGTGA 2 cut(s) 167, 372
AsuII TTCGAA 1 cut(s) 394
AvaII GGWCC 1 cut(s) 171
BciVI GTATCC 1 cut(s) 380
BfaI CTAG 1 cut(s) 403
BfuI GTATCC 1 cut(s) 380
BmcAI AGTACT 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 171
BmsI GCATC 1 cut(s) 51
Bpu14I TTCGAA 1 cut(s) 394
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 366
Bse3DI GCAATG 1 cut(s) 383
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMI GCAATG 1 cut(s) 383
BseNI ACTGG 1 cut(s) 366
BsiSI CCGG 1 cut(s) 373
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 260
Bsp119I TTCGAA 1 cut(s) 394
BspQI GCTCTTC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 383
BsrI ACTGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 2 cut(s) 135, 153
BstBI TTCGAA 1 cut(s) 394
BstC8I GCNNGC 1 cut(s) 28
BstF5I GGATG 1 cut(s) 127
BstNSI RCATGY 2 cut(s) 30, 232
BsuI GTATCC 1 cut(s) 380
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 171
Csp6I GTAC 2 cut(s) 192, 332
CviAII CATG 4 cut(s) 5, 27, 78, 229
CviJI RGCY 4 cut(s) 134, 204, 296, 402
CviKI_1 RGCY 4 cut(s) 134, 204, 296, 402
CviQI GTAC 2 cut(s) 192, 332
Eam1104I CTCTTC 2 cut(s) 135, 153
EarI CTCTTC 2 cut(s) 135, 153
Eco47I GGWCC 1 cut(s) 171
EcoT22I ATGCAT 3 cut(s) 6, 32, 226
FaeI CATG 4 cut(s) 8, 30, 81, 232
FaqI GGGAC 1 cut(s) 260
FatI CATG 4 cut(s) 4, 26, 77, 228
FokI GGATG 1 cut(s) 134
FspBI CTAG 1 cut(s) 403
HapII CCGG 1 cut(s) 373
Hin1II CATG 4 cut(s) 8, 30, 81, 232
HpaII CCGG 1 cut(s) 373
HphI GGTGA 2 cut(s) 167, 372
Hpy166II GTNNAC 2 cut(s) 280, 334
Hpy8I GTNNAC 2 cut(s) 280, 334
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 2 cut(s) 106, 276
HpyCH4V TGCA 8 cut(s) 4, 26, 30, 64, 166, 224, 273, 326
HpySE526I ACGT 2 cut(s) 106, 276
Hsp92II CATG 4 cut(s) 8, 30, 81, 232
LguI GCTCTTC 1 cut(s) 135
LpnPI CCDG 2 cut(s) 379, 386
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 403
MaeII ACGT 2 cut(s) 106, 276
MaeIII GTNAC 2 cut(s) 86, 109
MboII GAAGA 2 cut(s) 152, 170
MluCI AATT 1 cut(s) 65
MnlI CCTC 3 cut(s) 83, 112, 347
Mph1103I ATGCAT 3 cut(s) 6, 32, 226
MseI TTAA 2 cut(s) 186, 351
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 1 cut(s) 373
NlaIII CATG 4 cut(s) 8, 30, 81, 232
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 3 cut(s) 6, 32, 226
NspI RCATGY 2 cut(s) 30, 232
NspV TTCGAA 1 cut(s) 394
PaeI GCATGC 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 171
RsaI GTAC 2 cut(s) 193, 333
RsaNI GTAC 2 cut(s) 192, 332
RseI CAYNNNNRTG 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 186, 351
Sau96I GGNCC 1 cut(s) 171
ScaI AGTACT 1 cut(s) 193
SetI ASST 5 cut(s) 109, 279, 339, 357, 404
SfaNI GCATC 1 cut(s) 51
SfuI TTCGAA 1 cut(s) 394
SinI GGWCC 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 233
SphI GCATGC 1 cut(s) 30
Sse9I AATT 1 cut(s) 65
SspMI CTAG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 2 cut(s) 109, 279
TaqI TCGA 2 cut(s) 44, 394
TasI AATT 1 cut(s) 65
TatI WGTACW 2 cut(s) 191, 331
Tru1I TTAA 2 cut(s) 186, 351
Tru9I TTAA 2 cut(s) 186, 351
TscAI CASTG 1 cut(s) 20
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 24, 117
TspGWI ACGGA 2 cut(s) 45, 184
TspRI CASTG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 171
XceI RCATGY 2 cut(s) 30, 232
XspI CTAG 1 cut(s) 403
ZrmI AGTACT 1 cut(s) 193
Zsp2I ATGCAT 3 cut(s) 6, 32, 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.