Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4271317 .. 4277457

Gene Structure 6141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTCATATTTGGCCCTTAAATTTTTTGGAGTTCTCACGTTCGCTGGATTTTCTTGTGTTCGTAGGCAAGCGAATGAAGTGCCTATCGACTGGCTCGCTTTGAACATTTCTCCGGTTTCGAAAGGGGTTGGTTTGATTAAAGAATGTTACGAGTTTCTAGTTTGCTCAAAGCCTCAAATTTTACTGCAAAGTTTTAAAATTGGTAAAAGAGTAAACCTAACCCAAACCCTAATTGATTCAGAACTATTTCCTTTGTTTCACCTCCTAGCCCTGCGCCGTTCCCTCGTCTCGAGCGATTCAGCACTCCACATCGCGGCGCCATTTGTATTGTCTTCTTCTTCAATCTCTGTCTCTCTGACCTCTCTTCTGAAACTCCAACCTCCAGAAACCATGGCCGCTGCTGATATAGCTGCTCCGGTGCTGGAACCTACACAGCCGCACTATGACGTGAAGCTCTTCAACCGATGGAGCTTTGATGATGTCCAGGTCAGTGACATTTCACTGGCGGATTATGTTGGAGTTGCACCTTCCAAGCATGCAACGTATGTACCTCACACTGCTGGGAGATACTCGGTCAAACGATTCAGGAAAGCTCAGTGTCCTATTGTGGAGAGGCTTACAAACTCACTCATGATGCATGGGAGAAACAATGGAAAGAAACTCATGGCTGTCAGGATTGTTAGGCACGCGATGGAAATTATCCATTTGCTAACTGATCTAAACCCAATCCAAGTTATTGTTGATGCTGTCGTTAACAGTGGTCCACGTGAAGATGCAACTCGTATTGGATCTGCTGGAGTGGTTAGGCGTCAGGCAGTGGACATCTCACCTCTGAGACGTGTGAATCAGGCTATCTATCTCCTCACAACTGGTGCTCGTGAGTCTGCTTTCAGGAACGTTAAAACTATTGCTGAGTGTTTGGCTGATGAACTTATTAATGCTGCCAAGGGTTCCTCTAACAGTTATGCAATCAAGAAGAAGGATGAGATCGAAAGAGTTGCCAAGGCCAACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

339

Amino Acids

37.32

Weight (kDa)

9.62

Isoelectric Point (pI)

52.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	178 - 338	5.5e-41	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AccII	CGCG	2 cut(s)	314, 689
AciI	CCGC	4 cut(s)	314, 396, 437, 506
AclI	AACGTT	1 cut(s)	897
AclWI	GGATC	1 cut(s)	796
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	2 cut(s)	20, 177
AcvI	CACGTG	1 cut(s)	767
AcyI	GRCGYC	2 cut(s)	317, 808
AfaI	GTAC	1 cut(s)	549
AfiI	CCNNNNNNNGG	1 cut(s)	313
AflIII	ACRYGT	1 cut(s)	838
AgsI	TTSAA	3 cut(s)	103, 342, 460
AjiI	CACGTC	2 cut(s)	448, 839
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	4 cut(s)	410, 454, 471, 593
AluI	AGCT	4 cut(s)	410, 454, 471, 593
Alw21I	GWGCWC	1 cut(s)	877
Alw26I	GTCTC	3 cut(s)	292, 355, 829
AlwI	GGATC	1 cut(s)	796
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	3 cut(s)	12, 393, 1005
ApeKI	GCWGC	3 cut(s)	398, 410, 941
ApoI	RAATTY	2 cut(s)	20, 177
AseI	ATTAAT	1 cut(s)	936
Asp700I	GAANNNNTTC	2 cut(s)	246, 455
AspLEI	GCGC	2 cut(s)	276, 319
AspS9I	GGNCC	2 cut(s)	13, 761
AsuHPI	GGTGA	2 cut(s)	251, 819
AsuII	TTCGAA	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	761
BaeI	ACNNNNGTAYC	2 cut(s)	531, 564
BanI	GGYRCC	1 cut(s)	316
BauI	CACGAG	1 cut(s)	876
BbrPI	CACGTG	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	877
BbvI	GCAGC	3 cut(s)	385, 397, 928
BccI	CCATC	2 cut(s)	459, 685
BceAI	ACGGC	1 cut(s)	261
BcgI	CGANNNNNNTGC	4 cut(s)	61, 95, 980, 1014
BciT130I	CCWGG	1 cut(s)	485
BcoDI	GTCTC	3 cut(s)	292, 355, 829
BfaI	CTAG	2 cut(s)	158, 266
BfoI	RGCGCY	1 cut(s)	320
BisI	GCNGC	6 cut(s)	315, 396, 399, 411, 437, 942
BlsI	GCNGC	6 cut(s)	316, 397, 400, 412, 438, 943
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	761
BmeT110I	CYCGRG	1 cut(s)	289
BmgBI	CACGTC	2 cut(s)	448, 839
BmgT120I	GGNCC	2 cut(s)	13, 761
BmiI	GGNNCC	3 cut(s)	318, 426, 952
BmrFI	CCNGG	1 cut(s)	485
BmsI	GCATC	3 cut(s)	624, 733, 763
BpiI	GAAGAC	1 cut(s)	324
BpmI	CTGGAG	2 cut(s)	366, 816
Bpu14I	TTCGAA	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	767
BsaHI	GRCGYC	2 cut(s)	317, 808
BsaJI	CCNNGG	3 cut(s)	390, 945, 1002
BsaWI	WCCGGW	2 cut(s)	112, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	3 cut(s)	95, 507, 874
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	3 cut(s)	390, 945, 1002
BseGI	GGATG	1 cut(s)	988
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	3 cut(s)	608, 824, 903
BseNI	ACTGG	3 cut(s)	95, 507, 874
BseRI	GAGGAG	1 cut(s)	851
BseXI	GCAGC	3 cut(s)	385, 397, 928
BseYI	CCCAGC	1 cut(s)	560
Bsh1236I	CGCG	2 cut(s)	314, 689
BshFI	GGCC	3 cut(s)	14, 395, 1007
BshNI	GGYRCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	877
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	113, 416
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	3 cut(s)	292, 355, 829
BsmBI	CGTCTC	2 cut(s)	292, 829
BsnI	GGCC	3 cut(s)	14, 395, 1007
BsoBI	CYCGRG	1 cut(s)	289
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	877
Bsp143I	GATC	3 cut(s)	715, 788, 987
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	4 cut(s)	314, 396, 437, 506
BspANI	GGCC	3 cut(s)	14, 395, 1007
BspCNI	CTCAG	3 cut(s)	607, 825, 904
BspFNI	CGCG	2 cut(s)	314, 689
BspHI	TCATGA	1 cut(s)	630
BspLI	GGNNCC	3 cut(s)	318, 426, 952
BspPI	GGATC	1 cut(s)	796
BspQI	GCTCTTC	1 cut(s)	461
BspT104I	TTCGAA	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	316
BsrI	ACTGG	3 cut(s)	95, 507, 874
BssECI	CCNNGG	3 cut(s)	390, 945, 1002
BssMI	GATC	3 cut(s)	715, 788, 987
BssNI	GRCGYC	2 cut(s)	317, 808
BssSI	CACGAG	1 cut(s)	876
BssT1I	CCWWGG	3 cut(s)	390, 945, 1002
Bst2BI	CACGAG	1 cut(s)	876
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	3 cut(s)	758, 962, 1013
Bst6I	CTCTTC	2 cut(s)	369, 461
BstACI	GRCGYC	2 cut(s)	317, 808
BstBAI	YACGTR	1 cut(s)	767
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	4 cut(s)	69, 96, 537, 687
BstDEI	CTNAG	3 cut(s)	594, 833, 912
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	988
BstFNI	CGCG	2 cut(s)	314, 689
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	2 cut(s)	276, 319
BstKTI	GATC	3 cut(s)	718, 791, 990
BstMAI	GTCTC	3 cut(s)	292, 355, 829
BstMBI	GATC	3 cut(s)	715, 788, 987
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	483
BstUI	CGCG	2 cut(s)	314, 689
BstV1I	GCAGC	3 cut(s)	385, 397, 928
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	788
BstYI	RGATCY	1 cut(s)	788
BsuRI	GGCC	3 cut(s)	14, 395, 1007
BtgI	CCRYGG	1 cut(s)	390
BtgZI	GCGATG	2 cut(s)	295, 704
BtrI	CACGTC	2 cut(s)	448, 839
BtsCI	GGATG	1 cut(s)	988
BtsI	GCAGTG	2 cut(s)	555, 822
BtsIMutI	CAGTG	6 cut(s)	496, 500, 555, 602, 763, 822
Cac8I	GCNNGC	4 cut(s)	69, 96, 537, 687
CciI	TCATGA	1 cut(s)	630
CfoI	GCGC	2 cut(s)	276, 319
Cfr13I	GGNCC	2 cut(s)	13, 761
CseI	GACGC	1 cut(s)	797
Csp6I	GTAC	1 cut(s)	548
CviAII	CATG	5 cut(s)	391, 536, 631, 638, 664
CviQI	GTAC	1 cut(s)	548
DdeI	CTNAG	3 cut(s)	594, 833, 912
DinI	GGCGCC	1 cut(s)	318
DpnI	GATC	3 cut(s)	717, 790, 989
DpnII	GATC	3 cut(s)	715, 788, 987
DraI	TTTAAA	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	2 cut(s)	369, 461
EarI	CTCTTC	2 cut(s)	369, 461
EciI	GGCGGA	1 cut(s)	521
Eco130I	CCWWGG	3 cut(s)	390, 945, 1002
Eco47I	GGWCC	1 cut(s)	761
Eco72I	CACGTG	1 cut(s)	767
Eco88I	CYCGRG	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	3 cut(s)	390, 945, 1002
EcoT22I	ATGCAT	1 cut(s)	639
EgeI	GGCGCC	1 cut(s)	318
EheI	GGCGCC	1 cut(s)	318
ErhI	CCWWGG	3 cut(s)	390, 945, 1002
Esp3I	CGTCTC	2 cut(s)	292, 829
FaeI	CATG	5 cut(s)	394, 539, 634, 641, 667
FatI	CATG	5 cut(s)	390, 535, 630, 637, 663
Fnu4HI	GCNGC	6 cut(s)	315, 396, 399, 411, 437, 942
FokI	GGATG	1 cut(s)	995
Fsp4HI	GCNGC	6 cut(s)	315, 396, 399, 411, 437, 942
FspBI	CTAG	2 cut(s)	158, 266
GlaI	GCGC	2 cut(s)	275, 318
GluI	GCNGC	6 cut(s)	315, 396, 399, 411, 437, 942
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	2 cut(s)	366, 816
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	3 cut(s)	14, 395, 1007
HapII	CCGG	2 cut(s)	113, 416
HgaI	GACGC	1 cut(s)	797
HhaI	GCGC	2 cut(s)	276, 319
Hin1I	GRCGYC	2 cut(s)	317, 808
Hin1II	CATG	5 cut(s)	394, 539, 634, 641, 667
Hin6I	GCGC	2 cut(s)	274, 317
HinP1I	GCGC	2 cut(s)	274, 317
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	5 cut(s)	236, 296, 582, 844, 881
HpaI	GTTAAC	1 cut(s)	754
HpaII	CCGG	2 cut(s)	113, 416
HphI	GGTGA	2 cut(s)	251, 819
Hpy166II	GTNNAC	4 cut(s)	214, 754, 764, 820
Hpy188I	TCNGA	4 cut(s)	241, 357, 369, 834
Hpy188III	TCNNGA	8 cut(s)	289, 383, 586, 631, 673, 878, 892, 973
Hpy8I	GTNNAC	4 cut(s)	214, 754, 764, 820
HpyAV	CCTTC	2 cut(s)	537, 973
HpyCH4III	ACNGT	3 cut(s)	758, 962, 1013
HpyCH4IV	ACGT	6 cut(s)	38, 447, 542, 766, 838, 897
HpyCH4V	TGCA	6 cut(s)	187, 524, 539, 637, 776, 968
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	3 cut(s)	594, 833, 912
HpySE526I	ACGT	6 cut(s)	38, 447, 542, 766, 838, 897
Hsp92I	GRCGYC	2 cut(s)	317, 808
Hsp92II	CATG	5 cut(s)	394, 539, 634, 641, 667
HspAI	GCGC	2 cut(s)	274, 317
KasI	GGCGCC	1 cut(s)	316
KspAI	GTTAAC	1 cut(s)	754
Kzo9I	GATC	3 cut(s)	715, 788, 987
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	2 cut(s)	418, 468
Lsp1109I	GCAGC	3 cut(s)	385, 397, 928
LweI	GCATC	3 cut(s)	624, 733, 763
MaeI	CTAG	2 cut(s)	158, 266
MaeII	ACGT	6 cut(s)	38, 447, 542, 766, 838, 897
MaeIII	GTNAC	2 cut(s)	146, 491
MalI	GATC	3 cut(s)	717, 790, 989
MboI	GATC	3 cut(s)	715, 788, 987
MboII	GAAGA	7 cut(s)	324, 327, 330, 356, 448, 782, 988
MflI	RGATCY	1 cut(s)	788
MhlI	GDGCHC	1 cut(s)	877
MluCI	AATT	5 cut(s)	20, 177, 198, 231, 696
Mly113I	GGCGCC	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	890
MmeI	TCCRAC	2 cut(s)	400, 496
Mph1103I	ATGCAT	1 cut(s)	639
MroXI	GAANNNNTTC	2 cut(s)	246, 455
MseI	TTAA	7 cut(s)	18, 138, 195, 753, 900, 936, 1015
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	2 cut(s)	113, 416
MspR9I	CCNGG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	2 cut(s)	314, 689
MwoI	GCNNNNNNNGC	1 cut(s)	407
NarI	GGCGCC	1 cut(s)	317
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	3 cut(s)	715, 788, 987
NlaIII	CATG	5 cut(s)	394, 539, 634, 641, 667
NlaIV	GGNNCC	3 cut(s)	318, 426, 952
NmuCI	GTSAC	1 cut(s)	491
NsiI	ATGCAT	1 cut(s)	639
NspI	RCATGY	1 cut(s)	539
NspV	TTCGAA	1 cut(s)	119
PaeI	GCATGC	1 cut(s)	539
PaeR7I	CTCGAG	1 cut(s)	289
PagI	TCATGA	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PdmI	GAANNNNTTC	2 cut(s)	246, 455
PfeI	GAWTC	4 cut(s)	236, 296, 582, 844
PkrI	GCNGC	6 cut(s)	316, 397, 400, 412, 438, 943
PleI	GAGTC	1 cut(s)	889
PluTI	GGCGCC	1 cut(s)	320
PmaCI	CACGTG	1 cut(s)	767
PmlI	CACGTG	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	889
Ppu21I	YACGTR	1 cut(s)	767
PshBI	ATTAAT	1 cut(s)	936
Psp1406I	AACGTT	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	483
PspCI	CACGTG	1 cut(s)	767
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	3 cut(s)	318, 426, 952
PspPI	GGNCC	2 cut(s)	13, 761
PsuI	RGATCY	1 cut(s)	788
RsaI	GTAC	1 cut(s)	549
RsaNI	GTAC	1 cut(s)	548
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	7 cut(s)	18, 138, 195, 753, 900, 936, 1015
SatI	GCNGC	6 cut(s)	315, 396, 399, 411, 437, 942
Sau3AI	GATC	3 cut(s)	715, 788, 987
Sau96I	GGNCC	2 cut(s)	13, 761
SchI	GAGTC	1 cut(s)	890
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	1 cut(s)	877
SfaNI	GCATC	3 cut(s)	624, 733, 763
SfoI	GGCGCC	1 cut(s)	318
Sfr274I	CTCGAG	1 cut(s)	289
SfuI	TTCGAA	1 cut(s)	119
SinI	GGWCC	1 cut(s)	761
SlaI	CTCGAG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SphI	GCATGC	1 cut(s)	539
Sse9I	AATT	5 cut(s)	20, 177, 198, 231, 696
SsiI	CCGC	4 cut(s)	314, 396, 437, 506
SspDI	GGCGCC	1 cut(s)	316
SspMI	CTAG	2 cut(s)	158, 266
StyD4I	CCNGG	1 cut(s)	483
StyI	CCWWGG	3 cut(s)	390, 945, 1002
TaaI	ACNGT	3 cut(s)	758, 962, 1013
TaiI	ACGT	6 cut(s)	41, 450, 545, 769, 841, 900
TaqI	TCGA	4 cut(s)	87, 119, 290, 990
TaqII	GACCGA	1 cut(s)	562
TasI	AATT	5 cut(s)	20, 177, 198, 231, 696
TauI	GCSGC	3 cut(s)	317, 398, 439
TfiI	GAWTC	4 cut(s)	236, 296, 582, 844
Tru1I	TTAA	7 cut(s)	18, 138, 195, 753, 900, 936, 1015
Tru9I	TTAA	7 cut(s)	18, 138, 195, 753, 900, 936, 1015
TscAI	CASTG	6 cut(s)	496, 507, 562, 602, 763, 822
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	3 cut(s)	398, 410, 941
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	90, 942
TspRI	CASTG	6 cut(s)	496, 507, 562, 602, 763, 822
VpaK11BI	GGWCC	1 cut(s)	761
VspI	ATTAAT	1 cut(s)	936
XapI	RAATTY	2 cut(s)	20, 177
XceI	RCATGY	1 cut(s)	539
XhoI	CTCGAG	1 cut(s)	289
XmnI	GAANNNNTTC	2 cut(s)	246, 455
XspI	CTAG	2 cut(s)	158, 266
Zsp2I	ATGCAT	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.