Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4487159 .. 4487422

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCAAGAAGCAAATCAGGAAGTACCTGCTTGGCTTACTCGTTATGCATCAAGGACTTCTCATGGCGGAGGAGGCAGAAACCGGCGATCTGGGGGAGGTCGGTTTGGTGGCCGTGATTTTAGAAGGGACGGCTCTTTCAGTAGGGGTTCAGATTTTTACGGTGGAGGAAACAGTGGTGGTGGATATGGCAATTCTGGTGGCTATGGTGGCGGCTCTGGGGGTTATGGTCCGGGTAATGGCGGTATGACCAGTGCCTGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042579 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

88

Amino Acids

8.82

Weight (kDa)

10.13

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	34
AccB7I	CCANNNNNTGG	1 cut(s)	255
AciI	CCGC	3 cut(s)	66, 210, 240
AcoI	YGGCCR	1 cut(s)	109
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	236, 255
AjnI	CCWGG	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	255
AoxI	GGCC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	227
BceAI	ACGGC	2 cut(s)	96, 145
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	2 cut(s)	231, 256
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	231, 256
BmsI	GCATC	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 255
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	236, 255
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	82, 230
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	236, 255
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	3 cut(s)	66, 210, 240
BspANI	GGCC	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	161, 173
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 207
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	229, 254
BsuRI	GGCC	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	178, 256
BveI	ACCTGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	5 cut(s)	34, 111, 132, 201, 213
CviKI_1	RGCY	5 cut(s)	34, 111, 132, 201, 213
CviQI	GTAC	1 cut(s)	23
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	109
EciI	GGCGGA	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	49
FaeI	CATG	1 cut(s)	65
FaiI	YATR	6 cut(s)	45, 63, 186, 204, 225, 245
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	2 cut(s)	82, 230
Hin1II	CATG	1 cut(s)	65
HpaII	CCGG	2 cut(s)	82, 230
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	2 cut(s)	161, 173
HpyCH4V	TGCA	2 cut(s)	4, 47
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 207
Hsp92II	CATG	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	86
LpnPI	CCDG	8 cut(s)	2, 39, 75, 95, 180, 201, 241, 243
LweI	GCATC	1 cut(s)	56
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MluCI	AATT	1 cut(s)	190
MnlI	CCTC	4 cut(s)	62, 65, 89, 158
Mph1103I	ATGCAT	1 cut(s)	49
MspI	CCGG	2 cut(s)	82, 230
MspR9I	CCNGG	2 cut(s)	231, 256
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	72, 207
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	255
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	231, 256
SetI	ASST	2 cut(s)	28, 100
SfaNI	GCATC	1 cut(s)	56
SinI	GGWCC	1 cut(s)	227
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	3 cut(s)	66, 210, 240
StyD4I	CCNGG	2 cut(s)	229, 254
TaaI	ACNGT	2 cut(s)	161, 173
TasI	AATT	1 cut(s)	190
TauI	GCSGC	1 cut(s)	213
TscAI	CASTG	2 cut(s)	178, 256
TspRI	CASTG	2 cut(s)	178, 256
Van91I	CCANNNNNTGG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.