Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4704411 .. 4705953

Gene Structure 1543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATGTGTTGCGGGGGTGCGGAGGAGGAAAACTTCGGCCCACCTGCTAATCAATACACCGCCCCACCCAGAGGTGGGAATACATATGGAGGAGGAGGAGGCAATGACAGGGGAGAGCCAAGGGGTTCTAATACGGTCAAAAGTGGAGCTCCACAGAAGGTCTTACCCATCGAAATACCATCTATGTCTTTGGATGAACTAAATAGGTTAACGGGTAACTTTGGTCAGAAGGCTTTGATAGGAGAAGGTTCTTATGGCCGGGTTTTCCATGCAAAATTGAGTAATGGTAAGGCTGCTGCAATAAAGAAATTGGATACGGGTTCATCACAAGAGGACTCTGATTTTTCAGCACAATTATCAACAGTGTCAAGACTTAAGCATGGGCATTTTGTGGAGTTGATGGGGTATTGCTCGGAGGCAAATAACCGAATTTTGATATATGAGTTTGCAGCCATGGTCGATCTTTACATGACATATTACATGGAAGGAAAGGAGTACAAGGGGCTGAACCGGGTCCAGTTCTTAGTTGGAATCAGAGAATTAAAATTGCCTTTGGTGCAGCCAAAGGCCTTGAGTATCTCCACGAAAAGGTTCAACCTTCAATTGTTCACCGCGACATCAGATCTAGCAACGTCCTGCTTTTTGATGACCATGTTGCCAAAATTGCGGACTTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

227

Amino Acids

24.61

Weight (kDa)

8.82

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	76 - 156	6.2e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	78 - 173	5e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
Acc36I	ACCTGC	1 cut(s)	52
AccII	CGCG	1 cut(s)	614
AciI	CCGC	5 cut(s)	12, 20, 60, 612, 667
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	429
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	4 cut(s)	71, 74, 75, 588
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	595, 602, 675
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw21I	GWGCWC	1 cut(s)	151
AoxI	GGCC	3 cut(s)	37, 256, 567
ApeKI	GCWGC	4 cut(s)	293, 296, 449, 559
ApoI	RAATTY	1 cut(s)	429
Asp700I	GAANNNNTTC	1 cut(s)	590
AspS9I	GGNCC	2 cut(s)	38, 514
AsuC2I	CCSGG	2 cut(s)	260, 512
AsuHPI	GGTGA	1 cut(s)	601
AvaII	GGWCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	4 cut(s)	280, 283, 461, 571
BccI	CCATC	3 cut(s)	176, 187, 394
BciVI	GTATCC	1 cut(s)	307
BcnI	CCSGG	2 cut(s)	260, 512
BfaI	CTAG	1 cut(s)	626
BfrI	CTTAAG	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	52
BfuI	GTATCC	1 cut(s)	307
BglII	AGATCT	1 cut(s)	622
BisI	GCNGC	4 cut(s)	294, 297, 450, 560
BlsI	GCNGC	4 cut(s)	295, 298, 451, 561
Bme1390I	CCNGG	2 cut(s)	260, 512
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	2 cut(s)	38, 514
BmiI	GGNNCC	1 cut(s)	515
BmrFI	CCNGG	2 cut(s)	260, 512
BpuEI	CTTGAG	1 cut(s)	592
BpuMI	CCSGG	2 cut(s)	260, 512
BsaJI	CCNNGG	2 cut(s)	119, 453
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 74, 75, 588
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	119, 453
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	4 cut(s)	71, 74, 75, 588
BseMI	GCAATG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	4 cut(s)	38, 105, 108, 111
BseXI	GCAGC	4 cut(s)	280, 283, 461, 571
BsgI	GTGCAG	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	614
BshFI	GGCC	3 cut(s)	39, 258, 569
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	259, 511
BslI	CCNNNNNNNGG	4 cut(s)	71, 74, 75, 588
BsnI	GGCC	3 cut(s)	39, 258, 569
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	460, 622
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	5 cut(s)	12, 20, 60, 612, 667
BspANI	GGCC	3 cut(s)	39, 258, 569
BspFNI	CGCG	1 cut(s)	614
BspLI	GGNNCC	1 cut(s)	515
BspMI	ACCTGC	1 cut(s)	52
BspTI	CTTAAG	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	2 cut(s)	119, 453
BssMI	GATC	2 cut(s)	460, 622
BssT1I	CCWWGG	2 cut(s)	119, 453
Bst4CI	ACNGT	2 cut(s)	136, 364
BstAFI	CTTAAG	1 cut(s)	374
BstDEI	CTNAG	1 cut(s)	523
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	614
BstKTI	GATC	2 cut(s)	463, 625
BstMBI	GATC	2 cut(s)	460, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	556, 664
BstSCI	CCNGG	2 cut(s)	258, 510
BstUI	CGCG	1 cut(s)	614
BstV1I	GCAGC	4 cut(s)	280, 283, 461, 571
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	39, 258, 569
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	38, 514
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	6 cut(s)	269, 380, 454, 469, 481, 652
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	1 cut(s)	523
DpnI	GATC	2 cut(s)	462, 624
DpnII	GATC	2 cut(s)	460, 622
EaeI	YGGCCR	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	119, 453
Eco147I	AGGCCT	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	514
Eco53kI	GAGCTC	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	119, 453
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	119, 453
FaeI	CATG	6 cut(s)	272, 383, 457, 472, 484, 655
FatI	CATG	6 cut(s)	268, 379, 453, 468, 480, 651
FauI	CCCGC	1 cut(s)	5
FauNDI	CATATG	1 cut(s)	85
Fnu4HI	GCNGC	4 cut(s)	294, 297, 450, 560
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	4 cut(s)	294, 297, 450, 560
FspBI	CTAG	1 cut(s)	626
GluI	GCNGC	4 cut(s)	294, 297, 450, 560
HaeIII	GGCC	3 cut(s)	39, 258, 569
HapII	CCGG	2 cut(s)	259, 511
Hin1II	CATG	6 cut(s)	272, 383, 457, 472, 484, 655
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	2 cut(s)	335, 531
HpaI	GTTAAC	1 cut(s)	210
HpaII	CCGG	2 cut(s)	259, 511
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	2 cut(s)	210, 609
Hpy188I	TCNGA	5 cut(s)	228, 340, 415, 536, 622
Hpy188III	TCNNGA	1 cut(s)	369
Hpy8I	GTNNAC	2 cut(s)	210, 609
HpyAV	CCTTC	5 cut(s)	151, 223, 239, 479, 608
HpyCH4III	ACNGT	2 cut(s)	136, 364
HpyCH4IV	ACGT	1 cut(s)	632
HpyCH4V	TGCA	4 cut(s)	272, 299, 449, 559
HpyF10VI	GCNNNNNNNGC	2 cut(s)	556, 664
HpyF3I	CTNAG	1 cut(s)	523
HpySE526I	ACGT	1 cut(s)	632
Hsp92II	CATG	6 cut(s)	272, 383, 457, 472, 484, 655
KspAI	GTTAAC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	460, 622
LmnI	GCTCC	2 cut(s)	146, 154
LpnPI	CCDG	7 cut(s)	57, 82, 94, 272, 524, 530, 649
Lsp1109I	GCAGC	4 cut(s)	280, 283, 461, 571
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	1 cut(s)	632
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	2 cut(s)	462, 624
MboI	GATC	2 cut(s)	460, 622
MfeI	CAATTG	1 cut(s)	602
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	8 cut(s)	275, 308, 353, 429, 539, 545, 602, 662
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	9 cut(s)	16, 19, 65, 83, 86, 89, 92, 325, 409
MroXI	GAANNNNTTC	1 cut(s)	590
MseI	TTAA	3 cut(s)	209, 375, 542
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	2 cut(s)	259, 511
MspR9I	CCNGG	2 cut(s)	260, 512
MunI	CAATTG	1 cut(s)	602
MvnI	CGCG	1 cut(s)	614
MwoI	GCNNNNNNNGC	2 cut(s)	556, 664
NciI	CCSGG	2 cut(s)	260, 512
NcoI	CCATGG	1 cut(s)	453
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	2 cut(s)	460, 622
NlaIII	CATG	6 cut(s)	272, 383, 457, 472, 484, 655
NlaIV	GGNNCC	1 cut(s)	515
PaqCI	CACCTGC	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	590
PfeI	GAWTC	1 cut(s)	531
PkrI	GCNGC	4 cut(s)	295, 298, 451, 561
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	515
PspPI	GGNCC	2 cut(s)	38, 514
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	209, 375, 542
SatI	GCNGC	4 cut(s)	294, 297, 450, 560
Sau3AI	GATC	2 cut(s)	460, 622
Sau96I	GGNCC	2 cut(s)	38, 514
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	260, 512
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	9 cut(s)	46, 76, 151, 162, 209, 250, 593, 600, 635
SinI	GGWCC	1 cut(s)	514
SmlI	CTYRAG	2 cut(s)	374, 571
SmoI	CTYRAG	2 cut(s)	374, 571
Sse9I	AATT	8 cut(s)	275, 308, 353, 429, 539, 545, 602, 662
SseBI	AGGCCT	1 cut(s)	569
SsiI	CCGC	5 cut(s)	12, 20, 60, 612, 667
SspMI	CTAG	1 cut(s)	626
SstI	GAGCTC	1 cut(s)	151
StuI	AGGCCT	1 cut(s)	569
StyD4I	CCNGG	2 cut(s)	258, 510
StyI	CCWWGG	2 cut(s)	119, 453
TaaI	ACNGT	2 cut(s)	136, 364
TaiI	ACGT	1 cut(s)	635
TaqI	TCGA	2 cut(s)	171, 459
TasI	AATT	8 cut(s)	275, 308, 353, 429, 539, 545, 602, 662
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	1 cut(s)	531
Tru1I	TTAA	3 cut(s)	209, 375, 542
Tru9I	TTAA	3 cut(s)	209, 375, 542
TscAI	CASTG	1 cut(s)	369
TseI	GCWGC	4 cut(s)	293, 296, 449, 559
TspDTI	ATGAA	2 cut(s)	210, 312
TspRI	CASTG	1 cut(s)	369
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	1 cut(s)	429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XmnI	GAANNNNTTC	1 cut(s)	590
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.