pycom12g05950

Exostosin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
5939902 .. 5940857
956 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
ATGGAAGACTGTGTTTTGCAAGGGTGCATTCCTGTTGTCATTCAGGATGGGATTTTCCTGCCATATGAAAATGTGCTCAACTATGAAAGTTTTGCTGTCCGGATACACGAAGATGAAATTCCAAATTTGATAAATATTCTTCGGGCATTTAATGAGACAGAAATAAAGTTCAGGCTGGCTAATGTCCAGAAAATTTGGCAGAGGTTTCTGTATCGTGATTCTATTATGCTCGAAGCTGAGAGGCAAAAAACAGTTTTTGGTCGTATGACAGACTGGGCAGCTCAATTCTCGCAGCTAATTGAAGACGATGTGTTTGCAACATTGATACAGGTTTTGCATTACAAGTTGCATAATGACCCGTGGAGGCAAAATGTTCATGTCAAAAAGGAGTTCGGGTTACCTCAAGAGTGTTTGTTTAAAAGCAACTGA

Protein Analysis

143

Amino Acids

16.87

Weight (kDa)

5.34

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 2 - 49 4.9e-15 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 99
AcsI RAATTY 3 cut(s) 117, 124, 192
AgsI TTSAA 1 cut(s) 302
AluBI AGCT 3 cut(s) 236, 281, 295
AluI AGCT 3 cut(s) 236, 281, 295
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 149
Aor13HI TCCGGA 1 cut(s) 99
ApeKI GCWGC 2 cut(s) 278, 292
ApoI RAATTY 3 cut(s) 117, 124, 192
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
BbsI GAAGAC 2 cut(s) 12, 309
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 290, 304
BccI CCATC 1 cut(s) 41
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciVI GTATCC 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 149
BfuI GTATCC 1 cut(s) 96
BisI GCNGC 2 cut(s) 279, 293
BlsI GCNGC 2 cut(s) 280, 294
BmrI ACTGGG 1 cut(s) 283
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 2 cut(s) 12, 309
BpuEI CTTGAG 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 359
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bse1I ACTGG 1 cut(s) 278
BseAI TCCGGA 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 290, 304
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 229
BspEI TCCGGA 1 cut(s) 99
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 359
Bst4CI ACNGT 2 cut(s) 11, 253
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 359
BstEII GGTNACC 1 cut(s) 396
BstF5I GGATG 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 149
BstPI GGTNACC 1 cut(s) 396
BstV1I GCAGC 2 cut(s) 290, 304
BstV2I GAAGAC 2 cut(s) 12, 309
BsuI GTATCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 177
CviAII CATG 1 cut(s) 377
CviJI RGCY 5 cut(s) 175, 179, 236, 281, 295
CviKI_1 RGCY 5 cut(s) 175, 179, 236, 281, 295
DdeI CTNAG 1 cut(s) 237
DraI TTTAAA 1 cut(s) 418
Eco91I GGTNACC 1 cut(s) 396
EcoO65I GGTNACC 1 cut(s) 396
FaeI CATG 1 cut(s) 380
FaiI YATR 7 cut(s) 64, 66, 84, 227, 266, 351, 378
FatI CATG 1 cut(s) 376
FauNDI CATATG 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 279, 293
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 279, 293
GluI GCNGC 2 cut(s) 279, 293
HapII CCGG 1 cut(s) 100
Hin1II CATG 1 cut(s) 380
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 100
Hpy188III TCNNGA 5 cut(s) 44, 100, 187, 215, 404
HpyCH4III ACNGT 2 cut(s) 11, 253
HpyCH4V TGCA 5 cut(s) 19, 27, 317, 337, 349
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 1 cut(s) 380
Kpn2I TCCGGA 1 cut(s) 99
LpnPI CCDG 9 cut(s) 29, 45, 71, 113, 157, 161, 200, 259, 314
Lsp1109I GCAGC 2 cut(s) 290, 304
MaeIII GTNAC 1 cut(s) 396
MboII GAAGA 4 cut(s) 17, 122, 131, 314
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 5 cut(s) 117, 124, 192, 284, 297
MnlI CCTC 4 cut(s) 195, 234, 357, 411
MroI TCCGGA 1 cut(s) 99
MseI TTAA 2 cut(s) 150, 417
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 27
NdeI CATATG 1 cut(s) 64
NlaIII CATG 1 cut(s) 380
PctI GAATGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 2 cut(s) 280, 294
PspEI GGTNACC 1 cut(s) 396
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 2 cut(s) 150, 417
SatI GCNGC 2 cut(s) 279, 293
SduI GDGCHC 1 cut(s) 78
SetI ASST 6 cut(s) 206, 238, 283, 297, 333, 403
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
Sse9I AATT 5 cut(s) 117, 124, 192, 284, 297
SspI AATATT 1 cut(s) 136
TaaI ACNGT 2 cut(s) 11, 253
TaqI TCGA 1 cut(s) 231
TasI AATT 5 cut(s) 117, 124, 192, 284, 297
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 2 cut(s) 150, 417
Tru9I TTAA 2 cut(s) 150, 417
TseI GCWGC 2 cut(s) 278, 292
TspDTI ATGAA 4 cut(s) 81, 99, 129, 365
XapI RAATTY 3 cut(s) 117, 124, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.