pycom12g07170

Pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
7460635 .. 7461096
462 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
ATGCCGCATAGGAATGTTGTTTCCTGGACCACGATGGTATCTGGGTATGTGCATAACCAACAGGTGGATATTGCTAGAGAGCTTTTTGAAGTGATGCCGGAGAAAAAGGAGCTGGCTTGGACAGCAATGCTGATAGGTTACACTCAGTGTGGACGGATCATAGAGGCTTCGGATCTTTTTCAAGCAATGCCGATTAAGTCAGTTGTTGCTTGTAATGCCATCATACTTGGGTATGGCGAAAATGGAGAGGTAGCTAAAGCAAGGGAAGTGTTTGATAATATGAGAGATAGGGATGAGCGGACGTGGAGTGCGATGATTAAAGTTTACGTACACAAAGGTTTTGAATTGAAAGCCCTTGACTTGTTTGCTTTGATGCAAAGAGAAGGTATAAGGCCGAATTTCCCTTCTTTGATAAGTGTTCTATCTGTTTGTGGCAGCTTGGCAAATCATGGATCTAGCTAA

Protein Analysis

154

Amino Acids

17.19

Weight (kDa)

6.42

Isoelectric Point (pI)

20.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 4 - 35 7.5e-06 PPR repeat family
PPR_2 PF13041 67 - 97 2.7e-06 PPR repeat family
PPR PF01535 101 - 130 2.5e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 64
AccBSI CCGCTC 1 cut(s) 298
AciI CCGC 2 cut(s) 5, 298
AclWI GGATC 3 cut(s) 164, 180, 460
AcsI RAATTY 1 cut(s) 397
AdeI CACNNNGTG 1 cut(s) 147
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 4 cut(s) 89, 182, 344, 349
AjiI CACGTC 1 cut(s) 303
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 5 cut(s) 82, 112, 254, 438, 459
AluI AGCT 5 cut(s) 82, 112, 254, 438, 459
AlwI GGATC 3 cut(s) 164, 180, 460
AoxI GGCC 1 cut(s) 392
ApeKI GCWGC 1 cut(s) 435
ApoI RAATTY 1 cut(s) 397
AspS9I GGNCC 1 cut(s) 27
AvaII GGWCC 1 cut(s) 27
BaeI ACNNNNGTAYC 2 cut(s) 21, 54
BbvI GCAGC 1 cut(s) 447
BccI CCATC 2 cut(s) 28, 227
BciT130I CCWGG 1 cut(s) 25
BfaI CTAG 2 cut(s) 75, 456
BisI GCNGC 2 cut(s) 5, 436
BlsI GCNGC 2 cut(s) 6, 437
Bme1390I CCNGG 1 cut(s) 25
Bme18I GGWCC 1 cut(s) 27
BmgBI CACGTC 1 cut(s) 303
BmgT120I GGNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 2 cut(s) 84, 363
BsaAI YACGTR 1 cut(s) 328
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse3DI GCAATG 2 cut(s) 132, 192
BseBI CCWGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 2 cut(s) 132, 192
BseMII CTCAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 447
BshFI GGCC 1 cut(s) 394
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 64
BsnI GGCC 1 cut(s) 394
Bsp143I GATC 3 cut(s) 156, 172, 452
BspACI CCGC 2 cut(s) 5, 298
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 1 cut(s) 157
BspPI GGATC 3 cut(s) 164, 180, 460
BsrBI CCGCTC 1 cut(s) 298
BsrDI GCAATG 2 cut(s) 132, 192
BssMI GATC 3 cut(s) 156, 172, 452
Bst2UI CCWGG 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 3 cut(s) 159, 175, 455
BstMBI GATC 3 cut(s) 156, 172, 452
BstMWI GCNNNNNNNGC 2 cut(s) 122, 215
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstSNI TACGTA 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 447
BstX2I RGATCY 2 cut(s) 172, 452
BstYI RGATCY 2 cut(s) 172, 452
BsuRI GGCC 1 cut(s) 394
BtgZI GCGATG 1 cut(s) 326
BtrI CACGTC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 329
CviAII CATG 1 cut(s) 449
CviJI RGCY 9 cut(s) 82, 112, 116, 167, 254, 353, 394, 438, 459
CviKI_1 RGCY 9 cut(s) 82, 112, 116, 167, 254, 353, 394, 438, 459
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 1 cut(s) 144
DpnI GATC 3 cut(s) 158, 174, 454
DpnII GATC 3 cut(s) 156, 172, 452
DraIII CACNNNGTG 1 cut(s) 147
Eco105I TACGTA 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 23
FaeI CATG 1 cut(s) 452
FaiI YATR 9 cut(s) 9, 48, 54, 161, 224, 234, 281, 389, 450
FatI CATG 1 cut(s) 448
Fnu4HI GCNGC 2 cut(s) 5, 436
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 5, 436
FspBI CTAG 2 cut(s) 75, 456
GluI GCNGC 2 cut(s) 5, 436
HaeIII GGCC 1 cut(s) 394
HapII CCGG 1 cut(s) 98
Hin1II CATG 1 cut(s) 452
HpaII CCGG 1 cut(s) 98
Hpy166II GTNNAC 3 cut(s) 152, 325, 331
Hpy188I TCNGA 1 cut(s) 172
Hpy8I GTNNAC 3 cut(s) 152, 325, 331
HpyAV CCTTC 2 cut(s) 377, 414
HpyCH4IV ACGT 2 cut(s) 302, 327
HpyCH4V TGCA 2 cut(s) 52, 376
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 215
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 2 cut(s) 302, 327
Hsp92II CATG 1 cut(s) 452
Kzo9I GATC 3 cut(s) 156, 172, 452
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 6 cut(s) 10, 27, 37, 47, 98, 111
Lsp1109I GCAGC 1 cut(s) 447
LweI GCATC 2 cut(s) 84, 363
MaeI CTAG 2 cut(s) 75, 456
MaeII ACGT 2 cut(s) 302, 327
MaeIII GTNAC 1 cut(s) 137
MalI GATC 3 cut(s) 158, 174, 454
MbiI CCGCTC 1 cut(s) 298
MboI GATC 3 cut(s) 156, 172, 452
MflI RGATCY 2 cut(s) 172, 452
MluCI AATT 2 cut(s) 344, 397
MnlI CCTC 2 cut(s) 157, 241
MseI TTAA 2 cut(s) 195, 318
MslI CAYNNNNRTG 1 cut(s) 12
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 122, 215
NdeII GATC 3 cut(s) 156, 172, 452
NlaIII CATG 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PflMI CCANNNNNTGG 1 cut(s) 64
PfoI TCCNGGA 1 cut(s) 23
PkrI GCNGC 2 cut(s) 6, 437
Ppu21I YACGTR 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspPI GGNCC 1 cut(s) 27
PsuI RGATCY 2 cut(s) 172, 452
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 2 cut(s) 195, 318
SatI GCNGC 2 cut(s) 5, 436
Sau3AI GATC 3 cut(s) 156, 172, 452
Sau96I GGNCC 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 25
SfaNI GCATC 2 cut(s) 84, 363
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 12
SnaBI TACGTA 1 cut(s) 328
Sse9I AATT 2 cut(s) 344, 397
SsiI CCGC 2 cut(s) 5, 298
SspMI CTAG 2 cut(s) 75, 456
StyD4I CCNGG 1 cut(s) 23
TaiI ACGT 2 cut(s) 305, 330
TasI AATT 2 cut(s) 344, 397
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 195, 318
Tru9I TTAA 2 cut(s) 195, 318
TscAI CASTG 1 cut(s) 152
TseI GCWGC 1 cut(s) 435
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 1 cut(s) 152
Van91I CCANNNNNTGG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 1 cut(s) 397
XspI CTAG 2 cut(s) 75, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.