pycom12g07690

Plant protein of unknown function

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Reverse (-)
8283242 .. 8283659
418 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGTGTCCTGATTTCCACAATGATTTTGGGGTTACCTTTTACATCGGCTTCCTCAATGCACTCATTAATCATGCAGATGATGTTGTTAAGAAGCTAAGGTCAACCGGTGTACTTTATAACTTACTGGGGAGTGATAAGGCGATGGCTCATCTCTTCAACAAGATTGGCACTGACTTGGTTCATAACACTGACATATACTGTGATGTCAAGGCCGATACAGAAAAACACTACAAAACCAAGTGGAATGCCTCAATTCTCGTCTTCCAGACTCGGTACACGGTCAATTCTCCACCGTCTCCCTATTATGTCGTATGCCACAACTTGAAACTGCGGTTACAACTAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

13.22

Weight (kDa)

8.78

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 7 - 95 5.6e-16 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 117
AciI CCGC 1 cut(s) 331
AfaI GTAC 2 cut(s) 111, 275
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 2 cut(s) 157, 325
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 300
AoxI GGCC 1 cut(s) 210
AseI ATTAAT 1 cut(s) 66
AsiGI ACCGGT 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 253
BccI CCATC 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 300
BmrI ACTGGG 1 cut(s) 134
BmuI ACTGGG 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 253
Bpu10I CCTNAGC 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 104
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 129
BshFI GGCC 1 cut(s) 212
BshTI ACCGGT 1 cut(s) 104
BsiSI CCGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 300
BsmBI CGTCTC 1 cut(s) 300
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 212
BspACI CCGC 1 cut(s) 331
BspANI GGCC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 104
Bst4CI ACNGT 3 cut(s) 200, 280, 294
Bst6I CTCTTC 1 cut(s) 158
BstDEI CTNAG 2 cut(s) 95, 341
BstEII GGTNACC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 300
BstPI GGTNACC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 212
BtgZI GCGATG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 168, 186
Cfr10I RCCGGY 1 cut(s) 104
Csp6I GTAC 2 cut(s) 110, 274
CspAI ACCGGT 1 cut(s) 104
CviAII CATG 1 cut(s) 71
CviJI RGCY 4 cut(s) 48, 94, 146, 212
CviKI_1 RGCY 4 cut(s) 48, 94, 146, 212
CviQI GTAC 2 cut(s) 110, 274
DdeI CTNAG 2 cut(s) 95, 341
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 31
EcoO65I GGTNACC 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 300
FaeI CATG 1 cut(s) 74
FaiI YATR 7 cut(s) 72, 117, 183, 194, 196, 306, 313
FatI CATG 1 cut(s) 70
HaeIII GGCC 1 cut(s) 212
HapII CCGG 1 cut(s) 105
Hin1II CATG 1 cut(s) 74
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 1 cut(s) 268
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 3 cut(s) 102, 110, 276
Hpy188III TCNNGA 2 cut(s) 8, 265
Hpy8I GTNNAC 3 cut(s) 102, 110, 276
HpyCH4III ACNGT 3 cut(s) 200, 280, 294
HpyCH4V TGCA 2 cut(s) 59, 74
HpyF3I CTNAG 2 cut(s) 95, 341
Hsp92II CATG 1 cut(s) 74
LpnPI CCDG 4 cut(s) 21, 110, 118, 278
MaeIII GTNAC 2 cut(s) 31, 333
MboII GAAGA 2 cut(s) 145, 253
MluCI AATT 2 cut(s) 252, 283
MlyI GAGTC 1 cut(s) 262
MnlI CCTC 2 cut(s) 62, 259
MseI TTAA 2 cut(s) 66, 87
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 250
NlaIII CATG 1 cut(s) 74
PctI GAATGC 1 cut(s) 250
PinAI ACCGGT 1 cut(s) 104
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 66
PsiI TTATAA 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 31
RsaI GTAC 2 cut(s) 111, 275
RsaNI GTAC 2 cut(s) 110, 274
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 2 cut(s) 66, 87
SchI GAGTC 1 cut(s) 262
SetI ASST 4 cut(s) 38, 96, 101, 347
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 2 cut(s) 252, 283
SsiI CCGC 1 cut(s) 331
TaaI ACNGT 3 cut(s) 200, 280, 294
TasI AATT 2 cut(s) 252, 283
TatI WGTACW 1 cut(s) 109
Tru1I TTAA 2 cut(s) 66, 87
Tru9I TTAA 2 cut(s) 66, 87
TscAI CASTG 2 cut(s) 175, 193
TspDTI ATGAA 1 cut(s) 170
TspRI CASTG 2 cut(s) 175, 193
VspI ATTAAT 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.