pycom12g08060

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Reverse (-)
8960616 .. 8961123
508 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGAAAACTGTCCCTTTACGAACATTTGGGACTTCGGATCCAGCATTGACATCGCTAGTTAGATATTTGCTACATGACTCTGTCTGGCAACATTTACATTACATGAAGAAGAGTGAAGGATGGTGGACAGATGTGGAAGAAATGTATACTAAGAAATGGTACACTGCATCAAAACTAAAAATCAAAATTGAGAATTTGGCTACGGTTATATGCTGTAATGACATCCAATGA

Protein Analysis

77

Amino Acids

8.99

Weight (kDa)

8.6

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 146
AclWI GGATC 2 cut(s) 32, 45
AcsI RAATTY 1 cut(s) 193
AfaI GTAC 1 cut(s) 161
AlwI GGATC 2 cut(s) 32, 45
ApoI RAATTY 1 cut(s) 193
BamHI GGATCC 1 cut(s) 37
BccI CCATC 1 cut(s) 114
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BfaI CTAG 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 39
BmsI GCATC 1 cut(s) 176
BseGI GGATG 2 cut(s) 125, 222
BslFI GGGAC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 2 cut(s) 32, 45
BssMI GATC 1 cut(s) 37
BssNAI GTATAC 1 cut(s) 147
Bst1107I GTATAC 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 10, 205
Bst6I CTCTTC 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 2 cut(s) 125, 222
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BstZ17I GTATAC 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 125, 222
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 74, 103
CviJI RGCY 1 cut(s) 200
CviKI_1 RGCY 1 cut(s) 200
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
FaeI CATG 2 cut(s) 77, 106
FaiI YATR 5 cut(s) 75, 104, 147, 209, 211
FaqI GGGAC 1 cut(s) 43
FatI CATG 2 cut(s) 73, 102
FblI GTMKAC 1 cut(s) 146
FokI GGATG 2 cut(s) 132, 209
FspBI CTAG 1 cut(s) 56
Hin1II CATG 2 cut(s) 77, 106
HinfI GANTC 1 cut(s) 77
Hpy166II GTNNAC 3 cut(s) 126, 147, 162
Hpy188I TCNGA 1 cut(s) 37
Hpy8I GTNNAC 3 cut(s) 126, 147, 162
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 2 cut(s) 10, 205
HpyCH4V TGCA 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 2 cut(s) 77, 106
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 2 cut(s) 54, 70
LweI GCATC 1 cut(s) 176
MaeI CTAG 1 cut(s) 56
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 3 cut(s) 118, 121, 149
MflI RGATCY 1 cut(s) 37
MluCI AATT 2 cut(s) 186, 193
MlyI GAGTC 1 cut(s) 71
NdeII GATC 1 cut(s) 37
NlaIII CATG 2 cut(s) 77, 106
NlaIV GGNNCC 1 cut(s) 39
PflFI GACNNNGTC 1 cut(s) 80
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 37
PsyI GACNNNGTC 1 cut(s) 80
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
Sau3AI GATC 1 cut(s) 37
SchI GAGTC 1 cut(s) 71
SfaNI GCATC 1 cut(s) 176
SgeI CNNG 5 cut(s) 53, 68, 86, 97, 115
Sse9I AATT 2 cut(s) 186, 193
SspMI CTAG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 10, 205
TasI AATT 2 cut(s) 186, 193
TscAI CASTG 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 17, 119
TspRI CASTG 1 cut(s) 169
Tth111I GACNNNGTC 1 cut(s) 80
XapI RAATTY 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 146
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.