pycom12g08350

Transmembrane protein 184 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Reverse (-)
9544587 .. 9545095
509 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
ATGGATGATGGGAGATATTTCCCTGGAACTGTCTCTGTTCTTGGAGATTATGTATCGGCTGACTGTCCTTTGGATCCGGAGGAGGTTAGGGACAATGAATGCCTCACAGAGCTACGCTTTCCCACTCCTAACATTGATGTCAAAAGCGGCATGACCGTCAGAGAGAGTGTTCAAGACGTTTTCATTGGTGGTGGGGGATATGTAAGTATCTATTTAGTTGTACATTATGTAAAAAAACATTGGAACATAGCTTCTGTTGAAAGGGTTATTTTGATATATATATTAAAACAACTAGTGTTACACATTGGTATAGCCAATAAGATTCGTAGATTGTTGTTGATATTGGATGTGCACTATAAGACACTGAAAACATGTGTAAATTGCGAGGCTGCTAATTGTTGTCTGTGGTTAGGTGATAACTGTTTGCGGAAAAGAACAGATGCAAACGTTTCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

153

Amino Acids

17.14

Weight (kDa)

6.07

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 2 cut(s) 147, 427
AclI AACGTT 1 cut(s) 447
AclWI GGATC 2 cut(s) 68, 81
AfaI GTAC 1 cut(s) 222
AflIII ACRYGT 1 cut(s) 371
AgsI TTSAA 2 cut(s) 173, 260
AhlI ACTAGT 1 cut(s) 292
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 112, 251
AluI AGCT 2 cut(s) 112, 251
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 37
Alw44I GTGCAC 1 cut(s) 350
AlwI GGATC 2 cut(s) 68, 81
Aor13HI TCCGGA 1 cut(s) 76
ApaLI GTGCAC 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 389
AsuHPI GGTGA 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 354
BamHI GGATCC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 37
BcuI ACTAGT 1 cut(s) 292
BfaI CTAG 1 cut(s) 293
BisI GCNGC 2 cut(s) 148, 390
BlsI GCNGC 2 cut(s) 149, 391
Bme1390I CCNGG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
BseAI TCCGGA 1 cut(s) 76
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 10, 352
BseRI GAGGAG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 354
Bsp13I TCCGGA 1 cut(s) 76
Bsp1407I TGTACA 1 cut(s) 220
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 2 cut(s) 147, 427
BspEI TCCGGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 2 cut(s) 68, 81
BsrGI TGTACA 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 4 cut(s) 31, 65, 157, 422
BstAUI TGTACA 1 cut(s) 220
BstF5I GGATG 2 cut(s) 10, 352
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BtsCI GGATG 2 cut(s) 10, 352
BtsIMutI CAGTG 1 cut(s) 362
Csp6I GTAC 1 cut(s) 221
CviAII CATG 2 cut(s) 151, 372
CviJI RGCY 5 cut(s) 59, 112, 251, 314, 389
CviKI_1 RGCY 5 cut(s) 59, 112, 251, 314, 389
CviQI GTAC 1 cut(s) 221
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 22
FaeI CATG 2 cut(s) 154, 375
FaqI GGGAC 1 cut(s) 104
FatI CATG 2 cut(s) 150, 371
Fnu4HI GCNGC 2 cut(s) 148, 390
FokI GGATG 2 cut(s) 17, 359
Fsp4HI GCNGC 2 cut(s) 148, 390
FspBI CTAG 1 cut(s) 293
GluI GCNGC 2 cut(s) 148, 390
HapII CCGG 1 cut(s) 77
Hin1II CATG 2 cut(s) 154, 375
HinfI GANTC 1 cut(s) 322
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 2 cut(s) 161, 454
Hpy188III TCNNGA 2 cut(s) 77, 173
Hpy8I GTNNAC 1 cut(s) 352
HpyCH4III ACNGT 4 cut(s) 31, 65, 157, 422
HpyCH4IV ACGT 2 cut(s) 177, 447
HpyCH4V TGCA 2 cut(s) 352, 443
HpySE526I ACGT 2 cut(s) 177, 447
Hsp92II CATG 2 cut(s) 154, 375
Kpn2I TCCGGA 1 cut(s) 76
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 3 cut(s) 9, 36, 90
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 430
MaeI CTAG 1 cut(s) 293
MaeII ACGT 2 cut(s) 177, 447
MaeIII GTNAC 1 cut(s) 297
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 2 cut(s) 379, 394
MnlI CCTC 4 cut(s) 73, 76, 113, 379
MroI TCCGGA 1 cut(s) 76
MseI TTAA 1 cut(s) 284
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 1 cut(s) 24
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 154, 375
NlaIV GGNNCC 1 cut(s) 75
NspI RCATGY 1 cut(s) 375
PciI ACATGT 1 cut(s) 371
PctI GAATGC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 2 cut(s) 149, 391
PscI ACATGT 1 cut(s) 371
Psp1406I AACGTT 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 75
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 2 cut(s) 148, 390
Sau3AI GATC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 1 cut(s) 354
SetI ASST 6 cut(s) 87, 114, 180, 253, 415, 450
SfaNI GCATC 1 cut(s) 430
SgeI CNNG 9 cut(s) 35, 36, 53, 89, 163, 185, 305, 384, 397
SpeI ACTAGT 1 cut(s) 292
Sse9I AATT 2 cut(s) 379, 394
SsiI CCGC 2 cut(s) 147, 427
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 4 cut(s) 31, 65, 157, 422
TaiI ACGT 2 cut(s) 180, 450
TasI AATT 2 cut(s) 379, 394
TatI WGTACW 1 cut(s) 220
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TscAI CASTG 1 cut(s) 369
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 2 cut(s) 111, 172
TspRI CASTG 1 cut(s) 369
VneI GTGCAC 1 cut(s) 350
XceI RCATGY 1 cut(s) 375
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.