Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Sigma70_r4 | PF04545 | 12 - 64 | 2.3e-20 | Sigma-70, region 4 |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
No orthologs found for this gene in the current database.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 55 |
| AcsI | RAATTY | 1 cut(s) | 8 |
| AcuI | CTGAAG | 1 cut(s) | 209 |
| AfaI | GTAC | 2 cut(s) | 36, 224 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 8, 40 |
| AluBI | AGCT | 1 cut(s) | 130 |
| AluI | AGCT | 1 cut(s) | 130 |
| Alw26I | GTCTC | 1 cut(s) | 50 |
| ApoI | RAATTY | 1 cut(s) | 8 |
| BbsI | GAAGAC | 1 cut(s) | 113 |
| BccI | CCATC | 3 cut(s) | 69, 89, 127 |
| BcoDI | GTCTC | 1 cut(s) | 50 |
| BfaI | CTAG | 2 cut(s) | 38, 54 |
| BfuAI | ACCTGC | 1 cut(s) | 55 |
| BpiI | GAAGAC | 1 cut(s) | 113 |
| BsaAI | YACGTR | 1 cut(s) | 226 |
| BseGI | GGATG | 2 cut(s) | 100, 108 |
| BsmAI | GTCTC | 1 cut(s) | 50 |
| BsmI | GAATGC | 1 cut(s) | 176 |
| BspMI | ACCTGC | 1 cut(s) | 55 |
| BstBAI | YACGTR | 1 cut(s) | 226 |
| BstF5I | GGATG | 2 cut(s) | 100, 108 |
| BstMAI | GTCTC | 1 cut(s) | 50 |
| BstV2I | GAAGAC | 1 cut(s) | 113 |
| BtsCI | GGATG | 2 cut(s) | 100, 108 |
| BtsI | GCAGTG | 1 cut(s) | 110 |
| BtsIMutI | CAGTG | 1 cut(s) | 110 |
| BveI | ACCTGC | 1 cut(s) | 55 |
| Csp6I | GTAC | 2 cut(s) | 35, 223 |
| CviAII | CATG | 1 cut(s) | 171 |
| CviJI | RGCY | 1 cut(s) | 130 |
| CviKI_1 | RGCY | 1 cut(s) | 130 |
| CviQI | GTAC | 2 cut(s) | 35, 223 |
| Eco57I | CTGAAG | 1 cut(s) | 209 |
| FaeI | CATG | 1 cut(s) | 174 |
| FaiI | YATR | 3 cut(s) | 14, 172, 235 |
| FatI | CATG | 1 cut(s) | 170 |
| FokI | GGATG | 2 cut(s) | 107, 115 |
| FspBI | CTAG | 2 cut(s) | 38, 54 |
| Hin1II | CATG | 1 cut(s) | 174 |
| HinfI | GANTC | 1 cut(s) | 167 |
| Hpy188I | TCNGA | 2 cut(s) | 74, 182 |
| HpyAV | CCTTC | 2 cut(s) | 25, 93 |
| HpyCH4IV | ACGT | 1 cut(s) | 225 |
| HpyCH4V | TGCA | 2 cut(s) | 115, 176 |
| HpySE526I | ACGT | 1 cut(s) | 225 |
| Hsp92II | CATG | 1 cut(s) | 174 |
| LmnI | GCTCC | 1 cut(s) | 127 |
| LpnPI | CCDG | 2 cut(s) | 5, 50 |
| MaeI | CTAG | 2 cut(s) | 38, 54 |
| MaeII | ACGT | 1 cut(s) | 225 |
| MboII | GAAGA | 2 cut(s) | 118, 202 |
| MluCI | AATT | 2 cut(s) | 8, 153 |
| MlyI | GAGTC | 1 cut(s) | 176 |
| MnlI | CCTC | 2 cut(s) | 72, 85 |
| Mva1269I | GAATGC | 1 cut(s) | 176 |
| NlaIII | CATG | 1 cut(s) | 174 |
| PctI | GAATGC | 1 cut(s) | 176 |
| PleI | GAGTC | 1 cut(s) | 175 |
| PpsI | GAGTC | 1 cut(s) | 175 |
| Ppu21I | YACGTR | 1 cut(s) | 226 |
| RsaI | GTAC | 2 cut(s) | 36, 224 |
| RsaNI | GTAC | 2 cut(s) | 35, 223 |
| SchI | GAGTC | 1 cut(s) | 176 |
| SetI | ASST | 5 cut(s) | 36, 69, 83, 132, 228 |
| SgeI | CNNG | 7 cut(s) | 32, 50, 66, 77, 128, 183, 208 |
| Sse9I | AATT | 2 cut(s) | 8, 153 |
| SspMI | CTAG | 2 cut(s) | 38, 54 |
| TaiI | ACGT | 1 cut(s) | 228 |
| TasI | AATT | 2 cut(s) | 8, 153 |
| TscAI | CASTG | 1 cut(s) | 117 |
| TspDTI | ATGAA | 4 cut(s) | 17, 29, 119, 222 |
| TspRI | CASTG | 1 cut(s) | 117 |
| XapI | RAATTY | 1 cut(s) | 8 |
| XspI | CTAG | 2 cut(s) | 38, 54 |