Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11198075 .. 11198418

Gene Structure 344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTTTTATTGGTTCTTTTTTGTTTTCCAGGCAGAGGAGAGACACACTGAGATTCTTGGTCAGCTTCTGTACGCTGCCAAGCTGATTGCCACGCAGGAGGGTCTTGATGACGGCTTCAGGATTGTGATTAACGATGGGCCAAACGGATGTGCGTGTTCTTTCTTACTCTATATACTTGGGATTGATGACATACCATTAAGTACTATACCTTCTAACTGTCAATTGGTTTATCACTTTCACATCCATCTTCTTGGAGGACGGCAAATGAACTGGCCCCCGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016020 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

95

Amino Acids

10.72

Weight (kDa)

5.01

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	100
AfaI	GTAC	2 cut(s)	71, 202
AfiI	CCNNNNNNNGG	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	2 cut(s)	64, 82
AluI	AGCT	2 cut(s)	64, 82
Alw26I	GTCTC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	2 cut(s)	137, 272
ApeKI	GCWGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	137, 273
AsuC2I	CCSGG	2 cut(s)	278, 279
AvaI	CYCGRG	1 cut(s)	277
BarI	GAAGNNNNNNTAC	2 cut(s)	193, 225
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	2 cut(s)	128, 252
BceAI	ACGGC	2 cut(s)	127, 275
BciT130I	CCWGG	1 cut(s)	29
BcnI	CCSGG	2 cut(s)	278, 279
BcoDI	GTCTC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	3 cut(s)	29, 278, 279
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	137, 273
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	3 cut(s)	29, 278, 279
BpuMI	CCSGG	2 cut(s)	278, 279
BsaJI	CCNNGG	2 cut(s)	276, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	276, 277
BseGI	GGATG	2 cut(s)	152, 240
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	61
BshFI	GGCC	2 cut(s)	139, 274
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	139, 274
BsoBI	CYCGRG	1 cut(s)	277
BspANI	GGCC	2 cut(s)	139, 274
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	276, 277
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	152, 240
BstMAI	GTCTC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	3 cut(s)	27, 276, 277
BstV1I	GCAGC	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	139, 274
BtsCI	GGATG	2 cut(s)	152, 240
BtsIMutI	CAGTG	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	137, 273
Cfr9I	CCCGGG	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	70, 201
CviJI	RGCY	6 cut(s)	64, 82, 114, 139, 274, 282
CviKI_1	RGCY	6 cut(s)	64, 82, 114, 139, 274, 282
CviQI	GTAC	2 cut(s)	70, 201
DdeI	CTNAG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	27
FaiI	YATR	4 cut(s)	171, 173, 191, 206
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	159, 227
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	139, 274
HapII	CCGG	1 cut(s)	278
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	278
Hpy188III	TCNNGA	2 cut(s)	104, 118
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	48
LpnPI	CCDG	5 cut(s)	14, 41, 80, 103, 256
Lsp1109I	GCAGC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	239
MfeI	CAATTG	1 cut(s)	221
MluCI	AATT	1 cut(s)	221
MnlI	CCTC	3 cut(s)	28, 91, 248
MseI	TTAA	2 cut(s)	129, 197
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	3 cut(s)	29, 278, 279
MunI	CAATTG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	29
NciI	CCSGG	2 cut(s)	278, 279
NlaIV	GGNNCC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	2 cut(s)	137, 273
PstNI	CAGNNNCTG	1 cut(s)	67
RsaI	GTAC	2 cut(s)	71, 202
RsaNI	GTAC	2 cut(s)	70, 201
SaqAI	TTAA	2 cut(s)	129, 197
SatI	GCNGC	1 cut(s)	75
Sau96I	GGNCC	2 cut(s)	137, 273
ScaI	AGTACT	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	29, 278, 279
SetI	ASST	3 cut(s)	66, 84, 211
SmaI	CCCGGG	1 cut(s)	279
Sse9I	AATT	1 cut(s)	221
StyD4I	CCNGG	3 cut(s)	27, 276, 277
TaaI	ACNGT	1 cut(s)	218
TasI	AATT	1 cut(s)	221
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	129, 197
Tru9I	TTAA	2 cut(s)	129, 197
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	159
TspMI	CCCGGG	1 cut(s)	277
TspRI	CASTG	1 cut(s)	52
XmaI	CCCGGG	1 cut(s)	277
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.