pycom12g09850

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
11707909 .. 11708166
258 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGGGGGCTTCGCTCTCGAACCTGACGGAGGGGGCGAACGGGTCGGATCATGGACCGGGTCTTGGTGACATACCGGAGAGCTGTGTGGCCTGCGTCTTCATGTACCTGACTCCGCCTGAGATTTGCAATCTTGCGAGGCTCAACAGGGCGTTTCGCGGTGCGGCGTCGTCTGATTCGGTTTGGGAATCCAAGTTGCCCCCAAATTACGATCGATCTACTCGATTTGGTGCCTCCTCAGAGGTACCAAAACCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

86

Amino Acids

8.99

Weight (kDa)

5.15

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 22 - 63 1.9e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 241
AccB1I GGYRCC 2 cut(s) 227, 241
AccII CGCG 1 cut(s) 156
AciI CCGC 3 cut(s) 113, 156, 161
AclWI GGATC 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 164
AfaI GTAC 2 cut(s) 104, 243
AfiI CCNNNNNNNGG 2 cut(s) 28, 62
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
AlwI GGATC 1 cut(s) 54
AoxI GGCC 1 cut(s) 87
Asp718I GGTACC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 53
BanI GGYRCC 2 cut(s) 227, 241
BbsI GAAGAC 1 cut(s) 88
BcnI CCSGG 1 cut(s) 57
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 2 cut(s) 229, 243
BmrFI CCNGG 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 62
BseCI ATCGAT 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 28, 62
BseMII CTCAG 2 cut(s) 108, 249
BseRI GAGGAG 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 2 cut(s) 227, 241
BshVI ATCGAT 1 cut(s) 211
BsiEI CGRYCG 1 cut(s) 211
BsiSI CCGG 2 cut(s) 56, 74
BslI CCNNNNNNNGG 2 cut(s) 28, 62
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 46, 208, 212
BspACI CCGC 3 cut(s) 113, 156, 161
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 109, 248
BspDI ATCGAT 1 cut(s) 211
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 229, 243
BspPI GGATC 1 cut(s) 54
BspT107I GGYRCC 2 cut(s) 227, 241
BssMI GATC 3 cut(s) 46, 208, 212
BssNI GRCGYC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 117, 235
BstENI CCTNNNNNAGG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 3 cut(s) 49, 211, 215
BstMBI GATC 3 cut(s) 46, 208, 212
BstMCI CGRYCG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 55
BstUI CGCG 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 211
BsuRI GGCC 1 cut(s) 89
BsuTUI ATCGAT 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 53
ClaI ATCGAT 1 cut(s) 211
CseI GACGC 2 cut(s) 82, 153
Csp6I GTAC 2 cut(s) 103, 242
CviAII CATG 2 cut(s) 50, 100
CviJI RGCY 4 cut(s) 8, 81, 89, 139
CviKI_1 RGCY 4 cut(s) 8, 81, 89, 139
CviQI GTAC 2 cut(s) 103, 242
DdeI CTNAG 2 cut(s) 117, 235
DpnI GATC 3 cut(s) 48, 210, 214
DpnII GATC 3 cut(s) 46, 208, 212
EciI GGCGGA 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 53
EcoNI CCTNNNNNAGG 1 cut(s) 26
FaeI CATG 2 cut(s) 53, 103
FaiI YATR 3 cut(s) 51, 71, 101
FatI CATG 2 cut(s) 49, 99
Fnu4HI GCNGC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 89
HapII CCGG 2 cut(s) 56, 74
HgaI GACGC 2 cut(s) 82, 153
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 2 cut(s) 53, 103
HinfI GANTC 3 cut(s) 109, 173, 185
HpaII CCGG 2 cut(s) 56, 74
HphI GGTGA 1 cut(s) 77
Hpy188I TCNGA 3 cut(s) 46, 172, 238
Hpy188III TCNNGA 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 126
HpyF3I CTNAG 2 cut(s) 117, 235
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 2 cut(s) 53, 103
KpnI GGTACC 1 cut(s) 245
Kzo9I GATC 3 cut(s) 46, 208, 212
LpnPI CCDG 7 cut(s) 35, 69, 87, 103, 119, 129, 130
MaeIII GTNAC 1 cut(s) 65
MalI GATC 3 cut(s) 48, 210, 214
MboI GATC 3 cut(s) 46, 208, 212
MboII GAAGA 1 cut(s) 88
MluCI AATT 1 cut(s) 202
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 5 cut(s) 22, 129, 232, 241, 244
MspI CCGG 2 cut(s) 56, 74
MspR9I CCNGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 156
NciI CCSGG 1 cut(s) 57
NdeII GATC 3 cut(s) 46, 208, 212
NlaIII CATG 2 cut(s) 53, 103
NlaIV GGNNCC 2 cut(s) 229, 243
NmuCI GTSAC 1 cut(s) 65
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 217
PfeI GAWTC 2 cut(s) 173, 185
PflFI GACNNNGTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 163
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 229, 243
PspPI GGNCC 1 cut(s) 53
PsyI GACNNNGTC 1 cut(s) 57
PvuI CGATCG 1 cut(s) 211
RsaI GTAC 2 cut(s) 104, 243
RsaNI GTAC 2 cut(s) 103, 242
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 3 cut(s) 46, 208, 212
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 57
SetI ASST 5 cut(s) 24, 83, 108, 243, 253
SinI GGWCC 1 cut(s) 53
Sse9I AATT 1 cut(s) 202
SsiI CCGC 3 cut(s) 113, 156, 161
StyD4I CCNGG 1 cut(s) 55
TaqI TCGA 3 cut(s) 17, 211, 220
TasI AATT 1 cut(s) 202
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 2 cut(s) 173, 185
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 88
TspGWI ACGGA 1 cut(s) 41
Tth111I GACNNNGTC 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 53
XagI CCTNNNNNAGG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.