Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11864518 .. 11866467

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCGGCGTTGGAGGTTCGAGGAGAGTGGAAGAAAGTGGTGGAACAGTATGCTGAGTTAGCCTTCACTGCAACATGGATTTCCAGCAATGTAGTGAGGCCTTTTCTTTTCTTTATTACTTGTTTTTCTACTTGGCATAGGAACATTCAAACTACAGAAATGTGCTCTATGAAGACCTGCTTTCAGATTCTACTGAAGAACTTTTGTTCATTGGCAATCGGCACCCTTGAAGAGAGAAGAATCTGGAGTTATCAGTCAAGGAAGCTGATTTCTCTCTGCATGTTTGTTCTTTCTAAGTGTGACACGTCCCGTGCACTGGGTCAAGTTATTGTTGCTCTCACCTCCTTAGCAATGCGTTTTGTTGTTGTCTTAACTGATTTCAAAGGATGGAAGAGCGTTGCTGAGCATGACTGCCAGAGTGCAGATGCAGCAGTGAAGAATTTAGTTCGATTTATGGGGACTGGTGAAAGTGGTCTTTACCTATCTATTAGAAGATACAATAGCACATTGGATGCTCCTGGATTTTCACGGATAAGCAGTAACATACAAAGAGATGATAGTTTTCTGATTACAGCAAGTACAATAACTCTAGCTCTCAGGCCATTTCATCTAGCAAAGTTTGATTCAGATGGTCCTGGCTCATTGGATGCCCATTATGTTGCCGAGAAGTACTGCGTGTTTCTACTTACAATTCCTTGTCTTACTCAACGCCTTCCAGCTGTGCTTATATCTGCTATGAGGCACAAGTCCATTCTCTCACCTTGTTTCCAGACGTTACTGATTTTGAAGGACAAAATACTAAAGGAGACGTTAGATGTGGATCAATCAAAGGTTCATTTTCTTCCGAAGGTGATTCCCCCAGTTGGTTGGGCTCTTGTAAACATCATATGCCTAGCAACAGGGACAGAGAGTGATTCCGTTGATCCTGGAGGGTTCAATCAAGATTTGGACTCTGTCTCATATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

323

Amino Acids

36.01

Weight (kDa)

8.45

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	828, 917
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	580, 671
AfiI	CCNNNNNNNGG	2 cut(s)	316, 863
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	5 cut(s)	149, 230, 382, 787, 937
AjiI	CACGTC	1 cut(s)	306
AjnI	CCWGG	3 cut(s)	517, 634, 925
AluBI	AGCT	3 cut(s)	265, 593, 719
AluI	AGCT	3 cut(s)	265, 593, 719
Alw21I	GWGCWC	2 cut(s)	167, 316
Alw26I	GTCTC	2 cut(s)	800, 961
Alw44I	GTGCAC	1 cut(s)	312
AlwI	GGATC	2 cut(s)	828, 917
AoxI	GGCC	2 cut(s)	98, 599
ApaLI	GTGCAC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	632
AsuHPI	GGTGA	4 cut(s)	331, 476, 750, 862
AvaII	GGWCC	1 cut(s)	632
BaeGI	GKGCMC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	874
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	2 cut(s)	167, 316
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	2 cut(s)	381, 623
BciT130I	CCWGG	3 cut(s)	519, 636, 927
BcoDI	GTCTC	2 cut(s)	800, 961
BfaI	CTAG	3 cut(s)	590, 611, 893
BfmI	CTRYAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	6, 429
BlpI	GCTNAGC	1 cut(s)	402
BlsI	GCNGC	2 cut(s)	7, 430
BmcAI	AGTACT	1 cut(s)	671
Bme1390I	CCNGG	3 cut(s)	519, 636, 927
Bme18I	GGWCC	1 cut(s)	632
BmgBI	CACGTC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	632
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	3 cut(s)	519, 636, 927
BmrI	ACTGGG	2 cut(s)	326, 854
BmsI	GCATC	3 cut(s)	415, 502, 637
BmuI	ACTGGG	2 cut(s)	326, 854
BpiI	GAAGAC	1 cut(s)	179
BpmI	CTGGAG	2 cut(s)	265, 948
Bpu10I	CCTNAGC	1 cut(s)	346
Bpu1102I	GCTNAGC	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	819
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 863
Bse1I	ACTGG	3 cut(s)	321, 466, 860
Bse3DI	GCAATG	2 cut(s)	94, 357
Bse8I	GATNNNNATC	1 cut(s)	819
BseBI	CCWGG	3 cut(s)	519, 636, 927
BseGI	GGATG	3 cut(s)	392, 517, 652
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	2 cut(s)	316, 863
BseMI	GCAATG	2 cut(s)	94, 357
BseMII	CTCAG	3 cut(s)	45, 393, 610
BseNI	ACTGG	3 cut(s)	321, 466, 860
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	440
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	2 cut(s)	100, 601
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	2 cut(s)	167, 316
BslFI	GGGAC	3 cut(s)	292, 472, 916
BslI	CCNNNNNNNGG	2 cut(s)	316, 863
BsmAI	GTCTC	2 cut(s)	800, 961
BsmBI	CGTCTC	1 cut(s)	800
BsmFI	GGGAC	3 cut(s)	292, 472, 916
BsnI	GGCC	2 cut(s)	100, 601
Bsp1286I	GDGCHC	3 cut(s)	167, 316, 874
Bsp143I	GATC	2 cut(s)	820, 922
Bsp1720I	GCTNAGC	1 cut(s)	402
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	100, 601
BspCNI	CTCAG	3 cut(s)	46, 394, 609
BspLI	GGNNCC	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	2 cut(s)	828, 917
BspQI	GCTCTTC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	221
BsrDI	GCAATG	2 cut(s)	94, 357
BsrI	ACTGG	3 cut(s)	321, 466, 860
BssMI	GATC	2 cut(s)	820, 922
Bst2UI	CCWGG	3 cut(s)	519, 636, 927
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	225, 386
BstDEI	CTNAG	5 cut(s)	54, 294, 346, 402, 596
BstF5I	GGATG	3 cut(s)	392, 517, 652
BstKTI	GATC	2 cut(s)	823, 925
BstMAI	GTCTC	2 cut(s)	800, 961
BstMBI	GATC	2 cut(s)	820, 922
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 68, 428
BstNI	CCWGG	3 cut(s)	519, 636, 927
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	3 cut(s)	517, 634, 925
BstSFI	CTRYAG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	440
BstV2I	GAAGAC	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	867
BsuRI	GGCC	2 cut(s)	100, 601
BtrI	CACGTC	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	392, 517, 652
BtsI	GCAGTG	2 cut(s)	66, 438
BtsIMutI	CAGTG	3 cut(s)	66, 314, 438
BveI	ACCTGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	632
Csp6I	GTAC	2 cut(s)	579, 670
CviAII	CATG	3 cut(s)	75, 280, 407
CviJI	RGCY	8 cut(s)	62, 100, 265, 593, 601, 639, 719, 872
CviKI_1	RGCY	8 cut(s)	62, 100, 265, 593, 601, 639, 719, 872
CviQI	GTAC	2 cut(s)	579, 670
DdeI	CTNAG	5 cut(s)	54, 294, 346, 402, 596
DpnI	GATC	2 cut(s)	822, 924
DpnII	GATC	2 cut(s)	820, 922
Eam1104I	CTCTTC	2 cut(s)	225, 386
EarI	CTCTTC	2 cut(s)	225, 386
Eco147I	AGGCCT	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	874
Eco47I	GGWCC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	215
EcoRII	CCWGG	3 cut(s)	517, 634, 925
EcoT38I	GRGCYC	1 cut(s)	874
Esp3I	CGTCTC	1 cut(s)	800
FaeI	CATG	3 cut(s)	78, 283, 410
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	3 cut(s)	292, 472, 916
FatI	CATG	3 cut(s)	74, 279, 406
FauNDI	CATATG	2 cut(s)	887, 961
Fnu4HI	GCNGC	2 cut(s)	6, 429
FokI	GGATG	3 cut(s)	399, 524, 659
FriOI	GRGCYC	1 cut(s)	874
Fsp4HI	GCNGC	2 cut(s)	6, 429
FspBI	CTAG	3 cut(s)	590, 611, 893
GluI	GCNGC	2 cut(s)	6, 429
GsuI	CTGGAG	2 cut(s)	265, 948
HaeIII	GGCC	2 cut(s)	100, 601
Hin1II	CATG	3 cut(s)	78, 283, 410
HinfI	GANTC	6 cut(s)	187, 240, 623, 853, 914, 950
HphI	GGTGA	4 cut(s)	331, 476, 750, 862
Hpy166II	GTNNAC	2 cut(s)	314, 880
Hpy188I	TCNGA	4 cut(s)	186, 567, 628, 846
Hpy188III	TCNNGA	3 cut(s)	244, 769, 941
Hpy8I	GTNNAC	2 cut(s)	314, 880
HpyAV	CCTTC	4 cut(s)	73, 722, 781, 841
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	3 cut(s)	305, 773, 809
HpyCH4V	TGCA	5 cut(s)	71, 279, 314, 422, 428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 68, 428
HpyF3I	CTNAG	5 cut(s)	54, 294, 346, 402, 596
HpySE526I	ACGT	3 cut(s)	305, 773, 809
Hsp92II	CATG	3 cut(s)	78, 283, 410
Kzo9I	GATC	2 cut(s)	820, 922
LguI	GCTCTTC	1 cut(s)	386
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	3 cut(s)	415, 502, 637
MaeI	CTAG	3 cut(s)	590, 611, 893
MaeII	ACGT	3 cut(s)	305, 773, 809
MaeIII	GTNAC	3 cut(s)	299, 539, 774
MalI	GATC	2 cut(s)	822, 924
MboI	GATC	2 cut(s)	820, 922
MboII	GAAGA	9 cut(s)	43, 184, 208, 242, 249, 403, 448, 504, 833
MhlI	GDGCHC	3 cut(s)	167, 316, 874
MluCI	AATT	2 cut(s)	439, 690
MlyI	GAGTC	1 cut(s)	944
MnlI	CCTC	6 cut(s)	7, 14, 90, 352, 732, 923
MseI	TTAA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	719
MspR9I	CCNGG	3 cut(s)	519, 636, 927
MvaI	CCWGG	3 cut(s)	519, 636, 927
MwoI	GCNNNNNNNGC	3 cut(s)	59, 68, 428
NdeI	CATATG	2 cut(s)	887, 961
NdeII	GATC	2 cut(s)	820, 922
NlaIII	CATG	3 cut(s)	78, 283, 410
NlaIV	GGNNCC	1 cut(s)	223
NmeAIII	GCCGAG	1 cut(s)	688
NmuCI	GTSAC	1 cut(s)	299
NspI	RCATGY	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	100
PciSI	GCTCTTC	1 cut(s)	386
PfeI	GAWTC	5 cut(s)	187, 240, 623, 853, 914
PflFI	GACNNNGTC	1 cut(s)	953
PfoI	TCCNGGA	2 cut(s)	517, 925
PkrI	GCNGC	2 cut(s)	7, 430
PleI	GAGTC	1 cut(s)	944
PpsI	GAGTC	1 cut(s)	944
Psp6I	CCWGG	3 cut(s)	517, 634, 925
PspGI	CCWGG	3 cut(s)	517, 634, 925
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	632
PsyI	GACNNNGTC	1 cut(s)	953
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	2 cut(s)	580, 671
RsaNI	GTAC	2 cut(s)	579, 670
SapI	GCTCTTC	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	2 cut(s)	6, 429
Sau3AI	GATC	2 cut(s)	820, 922
Sau96I	GGNCC	1 cut(s)	632
ScaI	AGTACT	1 cut(s)	671
SchI	GAGTC	1 cut(s)	944
ScrFI	CCNGG	3 cut(s)	519, 636, 927
SduI	GDGCHC	3 cut(s)	167, 316, 874
SfaNI	GCATC	3 cut(s)	415, 502, 637
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	632
Sse9I	AATT	2 cut(s)	439, 690
SseBI	AGGCCT	1 cut(s)	100
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	3 cut(s)	590, 611, 893
StuI	AGGCCT	1 cut(s)	100
StyD4I	CCNGG	3 cut(s)	517, 634, 925
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	3 cut(s)	308, 776, 812
TaqI	TCGA	2 cut(s)	19, 448
TasI	AATT	2 cut(s)	439, 690
TatI	WGTACW	2 cut(s)	578, 669
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	187, 240, 623, 853, 914
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	3 cut(s)	73, 321, 438
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	4 cut(s)	185, 198, 596, 824
TspGWI	ACGGA	2 cut(s)	544, 907
TspRI	CASTG	3 cut(s)	73, 321, 438
Tth111I	GACNNNGTC	1 cut(s)	953
VneI	GTGCAC	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	632
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	283
XspI	CTAG	3 cut(s)	590, 611, 893
ZrmI	AGTACT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.