Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11992083 .. 11993130

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCACGAGGAAAACCACCTGTTTCGGGCTCGGGATGTTGGGGGCGGGTTGACCCGAACCTCCGAGCACCTCAGGCGCTCTGCATTTGCCCCACCAGAGAGTTGGCCTTGCAGAATTTGGAGATTATTGAGAAAATTGGGAAGTACACAGGGATAAAGGTGGAGTGTGCTGTCCCAAGTATAAGGGACAAAACCAGTTCTTGTGCAGTGCCAATTCATTCGAGGGCACCAGTATCAGCACAAATTGTGATTGGAACTCCTGGTACAATTAAGAAATTGATGTCATACAAAAAACTCGGTGTGACTTGTGTCAAGGTTCTTGTTTTTGATGAGGCTGATCAGATGCTAGCTGCGGTATGTATGATTAATCCATTCATTCATATGGTACTGCATTTCCTTAGTTTCCGCTCTGGATGCCTTGCTCTGTTAATGCTGTTCTTGATAGTGTTGTGTTGTACTGTATTGGATGTCCATAACAAAATTAATATCTGGGACACTAGATTTAAGGTTGTTTTTCTATTTTTACAGTGTGAGTTGAATACGAGCTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

185

Amino Acids

20.27

Weight (kDa)

8.92

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	19 - 118	1.2e-15	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	408
AciI	CCGC	3 cut(s)	46, 353, 406
AcsI	RAATTY	1 cut(s)	115
AfaI	GTAC	4 cut(s)	146, 265, 387, 457
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	538
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	350, 546
AluI	AGCT	2 cut(s)	350, 546
Alw21I	GWGCWC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	115
AseI	ATTAAT	2 cut(s)	366, 483
AspLEI	GCGC	1 cut(s)	79
AsuNHI	GCTAGC	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	31
AxyI	CCTNAGG	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	261
BclI	TGATCA	1 cut(s)	337
BfaI	CTAG	2 cut(s)	347, 498
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	333, 404
BmtI	GCTAGC	1 cut(s)	350
BoxI	GACNNNNGTC	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	195, 230
Bse21I	CCTNAGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	261
BseGI	GGATG	3 cut(s)	41, 419, 472
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	2 cut(s)	195, 230
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	337
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	31
BslFI	GGGAC	3 cut(s)	158, 200, 506
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmFI	GGGAC	3 cut(s)	158, 200, 506
BsnI	GGCC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	3 cut(s)	32, 70, 229
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	3 cut(s)	46, 353, 406
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	228
BspOI	GCTAGC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	226
BsrBI	CCGCTC	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	195, 230
BssMI	GATC	1 cut(s)	337
BssSI	CACGAG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	460, 528
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	72, 398
BstF5I	GGATG	3 cut(s)	41, 419, 472
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 414
BstNI	CCWGG	1 cut(s)	261
BstPAI	GACNNNNGTC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	103
Bsu36I	CCTNAGG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	3 cut(s)	41, 419, 472
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	213, 533
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	79
Csp6I	GTAC	4 cut(s)	145, 264, 386, 456
CviJI	RGCY	5 cut(s)	30, 107, 335, 350, 546
CviKI_1	RGCY	5 cut(s)	30, 107, 335, 350, 546
CviQI	GTAC	4 cut(s)	145, 264, 386, 456
DdeI	CTNAG	2 cut(s)	72, 398
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	32
Eco81I	CCTNAGG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	32
FaiI	YATR	7 cut(s)	182, 286, 358, 362, 381, 383, 474
FaqI	GGGAC	3 cut(s)	158, 200, 506
FauI	CCCGC	1 cut(s)	39
FauNDI	CATATG	1 cut(s)	381
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	3 cut(s)	48, 426, 479
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	2 cut(s)	347, 498
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	52, 147
Hpy188I	TCNGA	2 cut(s)	65, 342
Hpy188III	TCNNGA	3 cut(s)	33, 411, 439
Hpy8I	GTNNAC	2 cut(s)	52, 147
HpyCH4III	ACNGT	2 cut(s)	460, 528
HpyCH4V	TGCA	4 cut(s)	84, 112, 206, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 414
HpyF3I	CTNAG	2 cut(s)	72, 398
HspAI	GCGC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	337
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	333, 404
MaeI	CTAG	2 cut(s)	347, 498
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	1 cut(s)	339
MbiI	CCGCTC	1 cut(s)	408
MboI	GATC	1 cut(s)	337
MhlI	GDGCHC	3 cut(s)	32, 70, 229
MluCI	AATT	7 cut(s)	115, 135, 213, 243, 267, 275, 480
MnlI	CCTC	4 cut(s)	71, 81, 216, 325
MseI	TTAA	5 cut(s)	270, 366, 428, 483, 504
MslI	CAYNNNNRTG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	2 cut(s)	74, 414
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	1 cut(s)	337
NheI	GCTAGC	1 cut(s)	346
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	352
PshAI	GACNNNNGTC	1 cut(s)	308
PshBI	ATTAAT	2 cut(s)	366, 483
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	228
PsrI	GAACNNNNNNTAC	2 cut(s)	247, 279
RsaI	GTAC	4 cut(s)	146, 265, 387, 457
RsaNI	GTAC	4 cut(s)	145, 264, 386, 456
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	5 cut(s)	270, 366, 428, 483, 504
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	3 cut(s)	32, 70, 229
SetI	ASST	8 cut(s)	22, 63, 73, 162, 318, 352, 510, 548
SfaNI	GCATC	2 cut(s)	333, 404
SmiMI	CAYNNNNRTG	1 cut(s)	380
Sse9I	AATT	7 cut(s)	115, 135, 213, 243, 267, 275, 480
SsiI	CCGC	3 cut(s)	46, 353, 406
SspMI	CTAG	2 cut(s)	347, 498
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	460, 528
TaqI	TCGA	1 cut(s)	221
TasI	AATT	7 cut(s)	115, 135, 213, 243, 267, 275, 480
TatI	WGTACW	2 cut(s)	144, 455
Tru1I	TTAA	5 cut(s)	270, 366, 428, 483, 504
Tru9I	TTAA	5 cut(s)	270, 366, 428, 483, 504
TscAI	CASTG	2 cut(s)	213, 533
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	206, 364, 368
TspRI	CASTG	2 cut(s)	213, 533
VspI	ATTAAT	2 cut(s)	366, 483
XapI	RAATTY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	2 cut(s)	347, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.