pycom12g10560

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
12559654 .. 12561583
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1482 bp
ATGCTAATATATTATAAGCTCATTTATCTGCCGCTAATAACTAAATTTTGTAGATATTGTTTTTTTTTTGCCTCTAAAAGTAATAACACTAATAGGAGCGTTTATTGTTTTGCCTCTATTACGATTAATAAAGACAAATCTATATTTCTGCCCCTAATGAAGATTAATAAGGGCAAATCCTTATATCCACATCTAATCCACTTCTTCCCTGTTGGTTCTGGAAATCCCAAGAAATACTTCAGCGTTTTCAGCAATGACATTCTTGAACCTACCTTCAATGTAAGTTACAATTCGTCATTTGCTCTAATTTACAACTATGAATTATACCCCAAGAAAAAAGCTAAGAGCAGAGTTTTAGACAACAAATGGGCCAACTGGGGGGTCAAGTGGGCTGATCGCTCAGGACTGGTACCTATAACCATTGCGCATTGTTTTATTTTCTCCGTCACGACTCTTTTTGATTCTGTGATTTCCAGCATCTACAATGCCATCTTTATCGTACTGTCACAGTTTCATACTCCATTTTTAAAAAATTTCAATATCATAACTCTTTTACGAATTTTTTACAATTTCATACACTTCCTCAGTTTTCTGTTAATTCTTAATGATGTGAAAAAAAAAAAAATTTTTTGCATGGGGACCACCCCTTATCCCCTCACCCTTTCTTTCCCCTCCCGTCTTCCCCAAACCCAAACCCGGATCTCACCCACCCCTTCCAGTAATCCCATCCACCACAACATCTGCCTTTCTTCCCCCTCCTTTCTCCCTCCCTTCTCTCATATGCACCCACCCCCCACCATCCCTTCTCCCTCTGCCTTTCTTTTTCCTCCCTTCTCCCCCCTCCCTCCTCCGCACACCCAACCCAAACCCAGAATGACGGCATGGCGATTCCGCCCCAGCCACCGCCGCGGCCACATGTGGTTGTGCATCCAGCACGACCGCCTCTCCACCAAACCCACCCTCCTCCTCAAGCTCTCGGTCTCGACCCACCAAACCCGCCCAGCTCCATTTGTCAAATACCCAGCTTCTGATAAGCTCCATTTGTCAAATACCCAGCTTCTGATAAGCTCCATTTGTTCTTTGGCGACTCCGATTTCTGACTTGCTGGGCCACAAGGACTACGTGCGGTGCGGGGGTGAAATTTGGGTGTCAGAAATGGTGGAATATGGAGCATTTGAAGGTGGGTTTTGGGGGATTTTACAGAGGGAAGTGGGTTTTGGGAAATTGAATAGGAGTAGGAGGGTGCGGGGGAAGAGGGAGGGGGATGAAGAAGGTGGAAGAGCGGGAGGAGAAGCTGGAAGTGGAGGAGGTGAAGCCGGAAACAGACGAGAAACTGGAAGTCGAGGAGGCGAAGCCGGGTGGGATCTGGGTTTGGGGAAGACGGGAGGGGGAAGAAAGGGTGAGGGGATAAGGGGTGGGTCCCATTTTTTAAAATTTTTTAAAGCTACGTCACTATTTAATAAAGAATTGACAGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

494

Amino Acids

55.62

Weight (kDa)

9.91

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
Acc16I TGCGCA 1 cut(s) 426
Acc65I GGTACC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 409
AccBSI CCGCTC 1 cut(s) 1283
AccII CGCG 1 cut(s) 909
AclWI GGATC 2 cut(s) 707, 1371
AcoI YGGCCR 1 cut(s) 910
AcsI RAATTY 6 cut(s) 44, 532, 558, 624, 1140, 1433
AcuI CTGAAG 1 cut(s) 223
AfaI GTAC 2 cut(s) 411, 501
AfiI CCNNNNNNNGG 2 cut(s) 378, 696
AflIII ACRYGT 1 cut(s) 915
AgsI TTSAA 5 cut(s) 266, 277, 538, 1178, 1228
AjuI GAANNNNNNNTTGG 4 cut(s) 221, 253, 1200, 1232
Alw26I GTCTC 1 cut(s) 985
AlwI GGATC 2 cut(s) 707, 1371
AlwNI CAGNNNCTG 2 cut(s) 1028, 1060
AoxI GGCC 3 cut(s) 369, 910, 1108
ApoI RAATTY 6 cut(s) 44, 532, 558, 624, 1140, 1433
AseI ATTAAT 2 cut(s) 126, 165
Asp700I GAANNNNTTC 1 cut(s) 236
Asp718I GGTACC 1 cut(s) 409
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 4 cut(s) 369, 639, 1108, 1419
AsuC2I CCSGG 2 cut(s) 697, 1357
AsuHPI GGTGA 5 cut(s) 649, 696, 1148, 1322, 1412
AvaII GGWCC 2 cut(s) 639, 1419
BanI GGYRCC 1 cut(s) 409
BbsI GAAGAC 2 cut(s) 671, 1385
BccI CCATC 3 cut(s) 497, 734, 806
BceAI ACGGC 1 cut(s) 894
BcnI CCSGG 2 cut(s) 697, 1357
BcoDI GTCTC 1 cut(s) 985
BisI GCNGC 3 cut(s) 32, 907, 910
BlsI GCNGC 3 cut(s) 33, 908, 911
Bme1390I CCNGG 2 cut(s) 697, 1357
Bme18I GGWCC 2 cut(s) 639, 1419
BmgT120I GGNCC 4 cut(s) 369, 639, 1108, 1419
BmiI GGNNCC 4 cut(s) 411, 640, 1420, 1421
BmrFI CCNGG 2 cut(s) 697, 1357
BmrI ACTGGG 1 cut(s) 385
BmsI GCATC 2 cut(s) 486, 936
BmuI ACTGGG 1 cut(s) 385
BpiI GAAGAC 2 cut(s) 671, 1385
Bpu10I CCTNAGC 1 cut(s) 400
BpuEI CTTGAG 1 cut(s) 953
BpuMI CCSGG 2 cut(s) 697, 1357
BsaAI YACGTR 1 cut(s) 1123
BsaI GGTCTC 1 cut(s) 985
BsaJI CCNNGG 1 cut(s) 907
BsaXI ACNNNNNCTCC 4 cut(s) 929, 945, 959, 975
Bsc4I CCNNNNNNNGG 2 cut(s) 378, 696
Bse1I ACTGG 4 cut(s) 380, 411, 717, 1339
Bse3DI GCAATG 2 cut(s) 259, 420
BseDI CCNNGG 1 cut(s) 907
BseGI GGATG 4 cut(s) 726, 798, 927, 1270
BseLI CCNNNNNNNGG 2 cut(s) 378, 696
BseMI GCAATG 2 cut(s) 259, 420
BseMII CTCAG 2 cut(s) 414, 598
BseNI ACTGG 4 cut(s) 380, 411, 717, 1339
BseRI GAGGAG 6 cut(s) 837, 953, 956, 1302, 1320, 1359
BseYI CCCAGC 5 cut(s) 896, 1000, 1021, 1053, 1105
Bsh1236I CGCG 1 cut(s) 909
Bsh1285I CGRYCG 1 cut(s) 940
BshFI GGCC 3 cut(s) 371, 912, 1110
BshNI GGYRCC 1 cut(s) 409
BsiEI CGRYCG 1 cut(s) 940
BsiSI CCGG 3 cut(s) 697, 1317, 1356
BslFI GGGAC 2 cut(s) 652, 1405
BslI CCNNNNNNNGG 2 cut(s) 378, 696
BsmAI GTCTC 1 cut(s) 985
BsmFI GGGAC 2 cut(s) 652, 1405
BsnI GGCC 3 cut(s) 371, 912, 1110
Bso31I GGTCTC 1 cut(s) 985
Bsp143I GATC 3 cut(s) 394, 699, 1363
BspANI GGCC 3 cut(s) 371, 912, 1110
BspCNI CTCAG 2 cut(s) 413, 597
BspFNI CGCG 1 cut(s) 909
BspLI GGNNCC 4 cut(s) 411, 640, 1420, 1421
BspPI GGATC 2 cut(s) 707, 1371
BspQI GCTCTTC 1 cut(s) 1273
BspT107I GGYRCC 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 985
BsrBI CCGCTC 1 cut(s) 1283
BsrDI GCAATG 2 cut(s) 259, 420
BsrI ACTGG 4 cut(s) 380, 411, 717, 1339
BssECI CCNNGG 1 cut(s) 907
BssMI GATC 3 cut(s) 394, 699, 1363
Bst4CI ACNGT 2 cut(s) 504, 510
Bst6I CTCTTC 2 cut(s) 1247, 1273
BstBAI YACGTR 1 cut(s) 1123
BstDEI CTNAG 3 cut(s) 342, 400, 584
BstDSI CCRYGG 1 cut(s) 907
BstF5I GGATG 4 cut(s) 726, 798, 927, 1270
BstFNI CGCG 1 cut(s) 909
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 3 cut(s) 397, 702, 1366
BstMAI GTCTC 1 cut(s) 985
BstMBI GATC 3 cut(s) 394, 699, 1363
BstMCI CGRYCG 1 cut(s) 940
BstMWI GCNNNNNNNGC 2 cut(s) 249, 906
BstNSI RCATGY 1 cut(s) 919
BstSCI CCNGG 2 cut(s) 695, 1355
BstUI CGCG 1 cut(s) 909
BstV2I GAAGAC 2 cut(s) 671, 1385
BstX2I RGATCY 2 cut(s) 699, 1363
BstYI RGATCY 2 cut(s) 699, 1363
BsuRI GGCC 3 cut(s) 371, 912, 1110
BtgI CCRYGG 1 cut(s) 907
BtsCI GGATG 4 cut(s) 726, 798, 927, 1270
CaiI CAGNNNCTG 2 cut(s) 1028, 1060
CfoI GCGC 1 cut(s) 427
Cfr13I GGNCC 4 cut(s) 369, 639, 1108, 1419
Cfr42I CCGCGG 1 cut(s) 910
Csp6I GTAC 2 cut(s) 410, 500
CviAII CATG 3 cut(s) 634, 882, 916
CviQI GTAC 2 cut(s) 410, 500
DdeI CTNAG 3 cut(s) 342, 400, 584
DpnI GATC 3 cut(s) 396, 701, 1365
DpnII GATC 3 cut(s) 394, 699, 1363
DraI TTTAAA 3 cut(s) 528, 1431, 1441
EaeI YGGCCR 1 cut(s) 910
Eam1104I CTCTTC 2 cut(s) 1247, 1273
EarI CTCTTC 2 cut(s) 1247, 1273
EciI GGCGGA 1 cut(s) 881
Eco31I GGTCTC 1 cut(s) 985
Eco47I GGWCC 2 cut(s) 639, 1419
Eco57I CTGAAG 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 1419
FaeI CATG 3 cut(s) 637, 885, 919
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 2 cut(s) 652, 1405
FatI CATG 3 cut(s) 633, 881, 915
FauI CCCGC 4 cut(s) 1004, 1124, 1239, 1276
FauNDI CATATG 1 cut(s) 780
Fnu4HI GCNGC 3 cut(s) 32, 907, 910
FokI GGATG 4 cut(s) 713, 785, 914, 1277
Fsp4HI GCNGC 3 cut(s) 32, 907, 910
FspI TGCGCA 1 cut(s) 426
GlaI GCGC 1 cut(s) 426
GluI GCNGC 3 cut(s) 32, 907, 910
GsaI CCCAGC 5 cut(s) 900, 1004, 1025, 1057, 1109
HaeIII GGCC 3 cut(s) 371, 912, 1110
HapII CCGG 3 cut(s) 697, 1317, 1356
HhaI GCGC 1 cut(s) 427
Hin1II CATG 3 cut(s) 637, 885, 919
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HinfI GANTC 4 cut(s) 451, 461, 888, 1087
HpaII CCGG 3 cut(s) 697, 1317, 1356
HphI GGTGA 5 cut(s) 649, 696, 1148, 1322, 1412
Hpy188I TCNGA 5 cut(s) 1030, 1062, 1092, 1099, 1153
Hpy188III TCNNGA 5 cut(s) 219, 263, 402, 448, 982
HpyAV CCTTC 7 cut(s) 283, 723, 781, 813, 841, 1172, 1265
HpyCH4III ACNGT 2 cut(s) 504, 510
HpyCH4IV ACGT 2 cut(s) 1122, 1448
HpyCH4V TGCA 3 cut(s) 633, 784, 927
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 906
HpyF3I CTNAG 3 cut(s) 342, 400, 584
HpySE526I ACGT 2 cut(s) 1122, 1448
Hsp92II CATG 3 cut(s) 637, 885, 919
HspAI GCGC 1 cut(s) 425
KflI GGGWCCC 1 cut(s) 1419
KpnI GGTACC 1 cut(s) 413
KspI CCGCGG 1 cut(s) 910
Kzo9I GATC 3 cut(s) 394, 699, 1363
LguI GCTCTTC 1 cut(s) 1273
LmnI GCTCC 5 cut(s) 96, 1009, 1041, 1073, 1169
LweI GCATC 2 cut(s) 486, 936
MaeII ACGT 2 cut(s) 1122, 1448
MaeIII GTNAC 4 cut(s) 284, 445, 504, 1449
MalI GATC 3 cut(s) 396, 701, 1365
MbiI CCGCTC 1 cut(s) 1283
MboI GATC 3 cut(s) 394, 699, 1363
MboII GAAGA 9 cut(s) 172, 196, 671, 741, 1264, 1280, 1290, 1390, 1404
MflI RGATCY 2 cut(s) 699, 1363
MlyI GAGTC 2 cut(s) 445, 1081
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 8 cut(s) 126, 165, 527, 596, 603, 1430, 1440, 1458
MspA1I CMGCKG 1 cut(s) 909
MspI CCGG 3 cut(s) 697, 1317, 1356
MspR9I CCNGG 2 cut(s) 697, 1357
MvnI CGCG 1 cut(s) 909
MwoI GCNNNNNNNGC 2 cut(s) 249, 906
NciI CCSGG 2 cut(s) 697, 1357
NdeI CATATG 1 cut(s) 780
NdeII GATC 3 cut(s) 394, 699, 1363
NlaIII CATG 3 cut(s) 637, 885, 919
NlaIV GGNNCC 4 cut(s) 411, 640, 1420, 1421
NmuCI GTSAC 3 cut(s) 445, 504, 1449
NsbI TGCGCA 1 cut(s) 426
NspI RCATGY 1 cut(s) 919
PciI ACATGT 1 cut(s) 915
PciSI GCTCTTC 1 cut(s) 1273
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 2 cut(s) 461, 888
PkrI GCNGC 3 cut(s) 33, 908, 911
PleI GAGTC 2 cut(s) 445, 1081
PpsI GAGTC 2 cut(s) 445, 1081
Ppu21I YACGTR 1 cut(s) 1123
PpuMI RGGWCCY 1 cut(s) 1419
PscI ACATGT 1 cut(s) 915
PshBI ATTAAT 2 cut(s) 126, 165
PsiI TTATAA 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 1419
PspFI CCCAGC 5 cut(s) 896, 1000, 1021, 1053, 1105
PspN4I GGNNCC 4 cut(s) 411, 640, 1420, 1421
PspPI GGNCC 4 cut(s) 369, 639, 1108, 1419
PspPPI RGGWCCY 1 cut(s) 1419
PstNI CAGNNNCTG 2 cut(s) 1028, 1060
PsuI RGATCY 2 cut(s) 699, 1363
RsaI GTAC 2 cut(s) 411, 501
RsaNI GTAC 2 cut(s) 410, 500
SacII CCGCGG 1 cut(s) 910
SapI GCTCTTC 1 cut(s) 1273
SaqAI TTAA 8 cut(s) 126, 165, 527, 596, 603, 1430, 1440, 1458
SatI GCNGC 3 cut(s) 32, 907, 910
Sau3AI GATC 3 cut(s) 394, 699, 1363
Sau96I GGNCC 4 cut(s) 369, 639, 1108, 1419
SchI GAGTC 2 cut(s) 445, 1081
ScrFI CCNGG 2 cut(s) 697, 1357
SfaNI GCATC 2 cut(s) 486, 936
Sfr303I CCGCGG 1 cut(s) 910
SgrBI CCGCGG 1 cut(s) 910
SinI GGWCC 2 cut(s) 639, 1419
SmlI CTYRAG 1 cut(s) 968
SmoI CTYRAG 1 cut(s) 968
StyD4I CCNGG 2 cut(s) 695, 1355
TaaI ACNGT 2 cut(s) 504, 510
TaiI ACGT 2 cut(s) 1125, 1451
TaqI TCGA 2 cut(s) 983, 1342
TaqII GACCGA 1 cut(s) 967
TauI GCSGC 3 cut(s) 34, 909, 912
TfiI GAWTC 2 cut(s) 461, 888
Tru1I TTAA 8 cut(s) 126, 165, 527, 596, 603, 1430, 1440, 1458
Tru9I TTAA 8 cut(s) 126, 165, 527, 596, 603, 1430, 1440, 1458
TseFI GTSAC 3 cut(s) 445, 504, 1449
Tsp45I GTSAC 3 cut(s) 445, 504, 1449
TspDTI ATGAA 5 cut(s) 173, 333, 503, 562, 1281
TspGWI ACGGA 1 cut(s) 433
VpaK11BI GGWCC 2 cut(s) 639, 1419
VspI ATTAAT 2 cut(s) 126, 165
XapI RAATTY 6 cut(s) 44, 532, 558, 624, 1140, 1433
XceI RCATGY 1 cut(s) 919
XcmI CCANNNNNNNNNTGG 1 cut(s) 1078
XmnI GAANNNNTTC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.