Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

12580138 .. 12581946

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACAGTTCCGCCGTATCAGGATGATGTTAAGAATAATGAGATGACGAATTACTTCAATTCCCCTGCATTGGATGTTTCAGTTGCTTTTCCGCAAGCAACGCCGGTTTCTACTTTTCTTCCCTGCACTTCGGATTACTACCAGATTGATAATCTATTGACACCTGAGGAGCAGGCTATTAGGTTGAGTGTATGGAGAAAGACGTGGCTCCAATTATGGCAGAGTATTGTGAGAAGGCAGAGTTTCCATTTGAAATTATTCCAAAGCTTGGTGCATTGCGCATTGCTGGTGGGACAATCAAGGGTTATGGGTGTCCTGGTCTTTCTATTACGGCAAATGCTTTTGCTACAGCTGAAATTGCTAGAGTTGATGCAAGGTGTTCTACTTTCTTCTTGGTTCATTCCTCAGCAGCAATGCTTACTATTGAATAGCATTATGTGGGTCGGAGGCTCAAAAGCAGAAATATCTACCTTCTTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003997 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009514 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0022414 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046459 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

161

Amino Acids

18.4

Weight (kDa)

7.72

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	280
AccB7I	CCANNNNNTGG	1 cut(s)	268
AciI	CCGC	2 cut(s)	11, 92
AfiI	CCNNNNNNNGG	2 cut(s)	70, 268
AgsI	TTSAA	3 cut(s)	58, 253, 427
AjiI	CACGTC	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	2 cut(s)	267, 352
AluI	AGCT	2 cut(s)	267, 352
ApeKI	GCWGC	1 cut(s)	409
Asp700I	GAANNNNTTC	2 cut(s)	53, 257
AspLEI	GCGC	1 cut(s)	281
AxyI	CCTNAGG	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	421
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	317
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	347
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 268
Bse118I	RCCGGY	1 cut(s)	103
Bse21I	CCTNAGG	1 cut(s)	165
Bse3DI	GCAATG	3 cut(s)	274, 281, 419
BseBI	CCWGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	28, 79
BseLI	CCNNNNNNNGG	2 cut(s)	70, 268
BseMI	GCAATG	3 cut(s)	274, 281, 419
BseMII	CTCAG	2 cut(s)	156, 419
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	70, 268
BsmFI	GGGAC	1 cut(s)	306
BspACI	CCGC	2 cut(s)	11, 92
BspCNI	CTCAG	2 cut(s)	157, 418
BspLI	GGNNCC	1 cut(s)	209
BsrDI	GCAATG	3 cut(s)	274, 281, 419
BsrFI	RCCGGY	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	7
BstC8I	GCNNGC	2 cut(s)	96, 174
BstDEI	CTNAG	2 cut(s)	165, 405
BstF5I	GGATG	2 cut(s)	28, 79
BstHHI	GCGC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 358
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	421
Bsu36I	CCTNAGG	1 cut(s)	165
BtrI	CACGTC	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	28, 79
Cac8I	GCNNGC	2 cut(s)	96, 174
CfoI	GCGC	1 cut(s)	281
Cfr10I	RCCGGY	1 cut(s)	103
CviJI	RGCY	6 cut(s)	176, 208, 267, 352, 450, 480
CviKI_1	RGCY	6 cut(s)	176, 208, 267, 352, 450, 480
DdeI	CTNAG	2 cut(s)	165, 405
Eco81I	CCTNAGG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	315
FaiI	YATR	4 cut(s)	193, 217, 308, 437
FaqI	GGGAC	1 cut(s)	306
Fnu4HI	GCNGC	1 cut(s)	410
FokI	GGATG	2 cut(s)	35, 86
Fsp4HI	GCNGC	1 cut(s)	410
FspBI	CTAG	1 cut(s)	362
FspI	TGCGCA	1 cut(s)	280
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	410
HapII	CCGG	1 cut(s)	104
HhaI	GCGC	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	265
HpaII	CCGG	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	133, 446
Hpy188III	TCNNGA	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	228, 481
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	4 cut(s)	68, 126, 274, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 358
HpyF3I	CTNAG	2 cut(s)	165, 405
HpySE526I	ACGT	1 cut(s)	203
HspAI	GCGC	1 cut(s)	279
LmnI	GCTCC	2 cut(s)	169, 213
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	203
MboII	GAAGA	2 cut(s)	110, 381
MluCI	AATT	5 cut(s)	49, 58, 212, 254, 356
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	3 cut(s)	160, 414, 440
MroXI	GAANNNNTTC	2 cut(s)	53, 257
MseI	TTAA	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	100, 358
NlaIV	GGNNCC	1 cut(s)	209
NsbI	TGCGCA	1 cut(s)	280
PdmI	GAANNNNTTC	2 cut(s)	53, 257
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	7 cut(s)	166, 185, 206, 269, 354, 379, 473
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	347
Sse9I	AATT	5 cut(s)	49, 58, 212, 254, 356
SsiI	CCGC	2 cut(s)	11, 92
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	206
TasI	AATT	5 cut(s)	49, 58, 212, 254, 356
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	388
Van91I	CCANNNNNTGG	1 cut(s)	268
XmnI	GAANNNNTTC	2 cut(s)	53, 257
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.