Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13721000 .. 13722820

Gene Structure 1821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAGGGGATTGAGGATTAATGCCTGTTGGGTTCCCCATGTTTTTCTGTTTCTTATTGTTGTTTTGAACTTATTGCCTGGCACGCGTTGTGTGAACGGAGATGATTACAGTAGGACGAAAAGTGCTGCCGTGCTTTCTGAGGTTACACAGCTAATCTATAGCCGGCTTTCCATTGTCACTAGATATATTAGCACTAACCTGAAAAGTACTATGGGTTTCTGCATAAAGAATCTGGATGAGGATTGGAATACAGCATTCAATTTTTCGGGAAAGCTGGAATTCTTGAGCGAGTGCATTAAGCAGACGGATGCTTACACCTCATTAAAGTTCCTAATGAAAGATGTGATTCAATCACCAGGAGATGTCACTGATCGAATATGTACAGCAGGGGAAATACAGTTATATTTCAAGAGTTTCATAGCGAGTGAGCTGAAACGTTCCAACTACTTAAAACCAAACAAGAACTGCAATTTGAGCTCGTGGGCTTCCGGATGTGAACCTGGTTGGGGCTGTAGAGTCGGCCAGAAGGTTGACCTCAAAGTTATGGACTTGCCACCTAGAACTCGAGATTGTCAGCCTTGTTGTTCAGGGTTCTTCTGCCCCGAGGGCCTTACTTGTATGATACCTTGTCCTTTAGGTTCTTTCTGTCCCCGTGCAAAGCTGAATCAAACGACTGGATTATGTGATCCATATAGTTACCAGATACCAGCAGGAGAACCAAATCATACGTGTGGTGGTGCAGATATGTGGAATGCTTTTGAACTTAAAAATGATATTTTCTGCTCAGCTGGATCACACTGTCCATCTCCTATTCGTAAATACATTTGCAGTAGCGGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

281

Amino Acids

31.17

Weight (kDa)

8.33

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	85
AccIII	TCCGGA	1 cut(s)	488
AciI	CCGC	1 cut(s)	834
AclI	AACGTT	1 cut(s)	436
AclWI	GGATC	2 cut(s)	680, 799
AcoI	YGGCCR	1 cut(s)	520
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	2 cut(s)	208, 382
AfiI	CCNNNNNNNGG	1 cut(s)	506
AflIII	ACRYGT	2 cut(s)	83, 728
AgsI	TTSAA	5 cut(s)	67, 259, 350, 409, 761
AjnI	CCWGG	3 cut(s)	76, 355, 499
AluBI	AGCT	6 cut(s)	151, 274, 430, 477, 661, 788
AluI	AGCT	6 cut(s)	151, 274, 430, 477, 661, 788
Alw21I	GWGCWC	1 cut(s)	479
AlwI	GGATC	2 cut(s)	680, 799
Ama87I	CYCGRG	2 cut(s)	564, 602
Aor13HI	TCCGGA	1 cut(s)	488
AoxI	GGCC	2 cut(s)	520, 607
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	278
AseI	ATTAAT	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	607
AsuHPI	GGTGA	1 cut(s)	345
AvaI	CYCGRG	2 cut(s)	564, 602
BanII	GRGCYC	1 cut(s)	479
BauI	CACGAG	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	811
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	3 cut(s)	78, 357, 501
BfaI	CTAG	2 cut(s)	180, 558
BfmI	CTRYAG	2 cut(s)	157, 511
BglI	GCCNNNNNGGC	1 cut(s)	606
BisI	GCNGC	1 cut(s)	126
BlpI	GCTNAGC	1 cut(s)	784
BlsI	GCNGC	1 cut(s)	127
BmcAI	AGTACT	1 cut(s)	208
Bme1390I	CCNGG	3 cut(s)	78, 357, 501
BmeT110I	CYCGRG	2 cut(s)	564, 602
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	3 cut(s)	78, 357, 501
BmsI	GCATC	1 cut(s)	298
Bpu1102I	GCTNAGC	1 cut(s)	784
BpuEI	CTTGAG	1 cut(s)	304
BsaAI	YACGTR	1 cut(s)	729
BsaJI	CCNNGG	1 cut(s)	603
BsaWI	WCCGGW	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	679
BseAI	TCCGGA	1 cut(s)	488
BseBI	CCWGG	3 cut(s)	78, 357, 501
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	3 cut(s)	241, 313, 497
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	2 cut(s)	129, 798
BseNI	ACTGG	1 cut(s)	679
BseXI	GCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	759
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	522, 609
BsiHKAI	GWGCWC	1 cut(s)	479
BsiHKCI	CYCGRG	2 cut(s)	564, 602
BsiSI	CCGG	2 cut(s)	163, 489
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	633
BsmI	GAATGC	2 cut(s)	254, 757
BsnI	GGCC	2 cut(s)	522, 609
BsoBI	CYCGRG	2 cut(s)	564, 602
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp13I	TCCGGA	1 cut(s)	488
Bsp1407I	TGTACA	1 cut(s)	380
Bsp143I	GATC	3 cut(s)	370, 685, 791
Bsp1720I	GCTNAGC	1 cut(s)	784
BspACI	CCGC	1 cut(s)	834
BspANI	GGCC	2 cut(s)	522, 609
BspCNI	CTCAG	2 cut(s)	130, 797
BspEI	TCCGGA	1 cut(s)	488
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	2 cut(s)	680, 799
BsrFI	RCCGGY	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	679
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	3 cut(s)	370, 685, 791
BssSI	CACGAG	1 cut(s)	478
Bst2BI	CACGAG	1 cut(s)	478
Bst2UI	CCWGG	3 cut(s)	78, 357, 501
Bst4CI	ACNGT	3 cut(s)	110, 399, 800
BstAUI	TGTACA	1 cut(s)	380
BstBAI	YACGTR	1 cut(s)	729
BstC8I	GCNNGC	2 cut(s)	83, 164
BstDEI	CTNAG	2 cut(s)	138, 784
BstF5I	GGATG	3 cut(s)	241, 313, 497
BstFNI	CGCG	1 cut(s)	85
BstKTI	GATC	3 cut(s)	373, 688, 794
BstMBI	GATC	3 cut(s)	370, 685, 791
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 474, 606
BstNI	CCWGG	3 cut(s)	78, 357, 501
BstSCI	CCNGG	3 cut(s)	76, 355, 499
BstSFI	CTRYAG	2 cut(s)	157, 511
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	522, 609
BtsCI	GGATG	3 cut(s)	241, 313, 497
BtsIMutI	CAGTG	2 cut(s)	366, 796
Cac8I	GCNNGC	2 cut(s)	83, 164
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	607
CsiI	ACCWGGT	1 cut(s)	499
Csp6I	GTAC	2 cut(s)	207, 381
CviAII	CATG	1 cut(s)	38
CviQI	GTAC	2 cut(s)	207, 381
DdeI	CTNAG	2 cut(s)	138, 784
DpnI	GATC	3 cut(s)	372, 687, 793
DpnII	GATC	3 cut(s)	370, 685, 791
EaeI	YGGCCR	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	477
Eco88I	CYCGRG	2 cut(s)	564, 602
EcoICRI	GAGCTC	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	3 cut(s)	76, 355, 499
EcoT38I	GRGCYC	1 cut(s)	479
FaeI	CATG	1 cut(s)	41
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	1 cut(s)	37
FauI	CCCGC	1 cut(s)	827
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	3 cut(s)	248, 320, 504
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	2 cut(s)	180, 558
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	522, 609
HapII	CCGG	2 cut(s)	163, 489
Hin1II	CATG	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	4 cut(s)	229, 346, 516, 664
HpaII	CCGG	2 cut(s)	163, 489
HphI	GGTGA	1 cut(s)	345
Hpy166II	GTNNAC	3 cut(s)	94, 497, 532
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	6 cut(s)	233, 267, 283, 409, 489, 566
Hpy8I	GTNNAC	3 cut(s)	94, 497, 532
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	3 cut(s)	110, 399, 800
HpyCH4IV	ACGT	2 cut(s)	436, 728
HpyCH4V	TGCA	6 cut(s)	222, 294, 468, 656, 740, 828
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 474, 606
HpyF3I	CTNAG	2 cut(s)	138, 784
HpySE526I	ACGT	2 cut(s)	436, 728
Hsp92II	CATG	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	488
KroI	GCCGGC	1 cut(s)	162
KroNI	GCCGGC	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	370, 685, 791
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	298
MabI	ACCWGGT	1 cut(s)	499
MaeI	CTAG	2 cut(s)	180, 558
MaeII	ACGT	2 cut(s)	436, 728
MaeIII	GTNAC	4 cut(s)	142, 175, 364, 695
MalI	GATC	3 cut(s)	372, 687, 793
MboI	GATC	3 cut(s)	370, 685, 791
MboII	GAAGA	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	3 cut(s)	259, 278, 469
MluI	ACGCGT	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	525
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	6 cut(s)	6, 133, 232, 328, 545, 598
MroI	TCCGGA	1 cut(s)	488
MroNI	GCCGGC	1 cut(s)	162
MseI	TTAA	5 cut(s)	18, 297, 323, 449, 765
MslI	CAYNNNNRTG	1 cut(s)	729
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	2 cut(s)	163, 489
MspR9I	CCNGG	3 cut(s)	78, 357, 501
Mva1269I	GAATGC	2 cut(s)	254, 757
MvaI	CCWGG	3 cut(s)	78, 357, 501
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	3 cut(s)	82, 474, 606
NaeI	GCCGGC	1 cut(s)	164
NdeII	GATC	3 cut(s)	370, 685, 791
NgoMIV	GCCGGC	1 cut(s)	162
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	175, 364
PaeR7I	CTCGAG	1 cut(s)	564
PctI	GAATGC	2 cut(s)	254, 757
PdiI	GCCGGC	1 cut(s)	164
PfeI	GAWTC	3 cut(s)	229, 346, 664
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
Ppu21I	YACGTR	1 cut(s)	729
PshBI	ATTAAT	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	479
Psp1406I	AACGTT	1 cut(s)	436
Psp6I	CCWGG	3 cut(s)	76, 355, 499
PspGI	CCWGG	3 cut(s)	76, 355, 499
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	607
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	2 cut(s)	208, 382
RsaNI	GTAC	2 cut(s)	207, 381
RseI	CAYNNNNRTG	1 cut(s)	729
SacI	GAGCTC	1 cut(s)	479
SaqAI	TTAA	5 cut(s)	18, 297, 323, 449, 765
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	3 cut(s)	370, 685, 791
Sau96I	GGNCC	1 cut(s)	607
ScaI	AGTACT	1 cut(s)	208
SchI	GAGTC	1 cut(s)	525
ScrFI	CCNGG	3 cut(s)	78, 357, 501
SduI	GDGCHC	1 cut(s)	479
SexAI	ACCWGGT	1 cut(s)	499
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	2 cut(s)	157, 511
Sfr274I	CTCGAG	1 cut(s)	564
SlaI	CTCGAG	1 cut(s)	564
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	2 cut(s)	283, 564
SmoI	CTYRAG	2 cut(s)	283, 564
Sse9I	AATT	3 cut(s)	259, 278, 469
SsiI	CCGC	1 cut(s)	834
SspMI	CTAG	2 cut(s)	180, 558
SstI	GAGCTC	1 cut(s)	479
StyD4I	CCNGG	3 cut(s)	76, 355, 499
TaaI	ACNGT	3 cut(s)	110, 399, 800
TaiI	ACGT	2 cut(s)	439, 731
TaqI	TCGA	2 cut(s)	373, 565
TasI	AATT	3 cut(s)	259, 278, 469
TatI	WGTACW	2 cut(s)	206, 380
TfiI	GAWTC	3 cut(s)	229, 346, 664
Tru1I	TTAA	5 cut(s)	18, 297, 323, 449, 765
Tru9I	TTAA	5 cut(s)	18, 297, 323, 449, 765
TscAI	CASTG	2 cut(s)	373, 803
TseFI	GTSAC	2 cut(s)	175, 364
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	2 cut(s)	175, 364
TspDTI	ATGAA	2 cut(s)	350, 406
TspGWI	ACGGA	2 cut(s)	111, 320
TspRI	CASTG	2 cut(s)	373, 803
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	1 cut(s)	278
XhoI	CTCGAG	1 cut(s)	564
XspI	CTAG	2 cut(s)	180, 558
ZrmI	AGTACT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.