Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13785675 .. 13787248

Gene Structure 1574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCAGAAAACTGATGGTCTTTTTCTTAAGTGTTGTCGTGAGGTTGCAGAGAAGTACCCTGAAATCAAATATGAGGAAGTCGTCATCGATAATTGCTGTATGATGCTTGTGAAGAATCCAGCACTTTTTGATGTGTTAGTGATGCCTAACCTCTATGGTGATATTATTAGTGATCTTTGTGCTGGGTTGATAGGTGGTTTGGGGTTAACGCCAAGCTGCAATATTGGTGAGGGAGGCATAGCCCTTGCTGAAGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGAATTTGGCCAACCCAACTGCCCTGCTTCTGAGTGCTGTTACAATGCTACGCCATTTGGAGCTCCATGATAAGGCTGATCGGATCCAAAATGCGATCCTCGGCACAATTTCTGAGGGGAAGTTCCGAACTGCTGACCTTGGTGGCTCTTCATCAACTTCTGACTTTACGCAGGCAATCATCGATCGATCTTTGAAAGGATGCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004448 GO:0004449 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009507 GO:0009536 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016616 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

165

Amino Acids

17.37

Weight (kDa)

4.97

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	1 - 155	3.8e-59	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	489
AclWI	GGATC	3 cut(s)	364, 376, 377
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	56, 258
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	481
AluBI	AGCT	3 cut(s)	216, 254, 349
AluI	AGCT	3 cut(s)	216, 254, 349
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	3 cut(s)	364, 376, 377
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	216
ApoI	RAATTY	1 cut(s)	289
AsuHPI	GGTGA	2 cut(s)	170, 239
BalI	TGGCCA	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	26
BisI	GCNGC	2 cut(s)	217, 490
BlsI	GCNGC	2 cut(s)	218, 491
BmiI	GGNNCC	1 cut(s)	371
BmsI	GCATC	3 cut(s)	93, 132, 476
Bsa29I	ATCGAT	3 cut(s)	87, 468, 472
BsaJI	CCNNGG	2 cut(s)	385, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
BseCI	ATCGAT	3 cut(s)	87, 468, 472
BseDI	CCNNGG	2 cut(s)	385, 424
BseGI	GGATG	1 cut(s)	491
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	308, 390
BseXI	GCAGC	1 cut(s)	203
BseYI	CCCAGC	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	472
BshFI	GGCC	1 cut(s)	296
BshVI	ATCGAT	3 cut(s)	87, 468, 472
BsiEI	CGRYCG	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	358
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	6 cut(s)	172, 364, 369, 381, 469, 473
BspACI	CCGC	1 cut(s)	489
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	2 cut(s)	309, 391
BspDI	ATCGAT	3 cut(s)	87, 468, 472
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	3 cut(s)	364, 376, 377
BspQI	GCTCTTC	1 cut(s)	439
BspTI	CTTAAG	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	385, 424
BssMI	GATC	6 cut(s)	172, 364, 369, 381, 469, 473
BssT1I	CCWWGG	1 cut(s)	424
Bst6I	CTCTTC	1 cut(s)	439
BstAFI	CTTAAG	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	317, 399
BstF5I	GGATG	1 cut(s)	491
BstKTI	GATC	6 cut(s)	175, 367, 372, 384, 472, 476
BstMBI	GATC	6 cut(s)	172, 364, 369, 381, 469, 473
BstMCI	CGRYCG	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
Bsu15I	ATCGAT	3 cut(s)	87, 468, 472
BsuRI	GGCC	1 cut(s)	296
BsuTUI	ATCGAT	3 cut(s)	87, 468, 472
BtsCI	GGATG	1 cut(s)	491
Cac8I	GCNNGC	1 cut(s)	459
CaiI	CAGNNNCTG	1 cut(s)	272
ClaI	ATCGAT	3 cut(s)	87, 468, 472
Csp6I	GTAC	2 cut(s)	55, 257
CviAII	CATG	2 cut(s)	260, 353
CviJI	RGCY	8 cut(s)	216, 242, 254, 296, 349, 362, 432, 492
CviKI_1	RGCY	8 cut(s)	216, 242, 254, 296, 349, 362, 432, 492
CviQI	GTAC	2 cut(s)	55, 257
DdeI	CTNAG	2 cut(s)	317, 399
DpnI	GATC	6 cut(s)	174, 366, 371, 383, 471, 475
DpnII	GATC	6 cut(s)	172, 364, 369, 381, 469, 473
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	2 cut(s)	263, 356
FaiI	YATR	6 cut(s)	72, 101, 156, 239, 261, 354
FatI	CATG	2 cut(s)	259, 352
Fnu4HI	GCNGC	2 cut(s)	217, 490
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	217, 490
GluI	GCNGC	2 cut(s)	217, 490
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	263, 356
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	115
HpaI	GTTAAC	1 cut(s)	207
HphI	GGTGA	2 cut(s)	170, 239
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	5 cut(s)	318, 369, 400, 413, 448
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	4, 47, 219
HpyF3I	CTNAG	2 cut(s)	317, 399
Hsp92II	CATG	2 cut(s)	263, 356
KspAI	GTTAAC	1 cut(s)	207
Kzo9I	GATC	6 cut(s)	172, 364, 369, 381, 469, 473
LguI	GCTCTTC	1 cut(s)	439
LmnI	GCTCC	2 cut(s)	346, 354
LpnPI	CCDG	7 cut(s)	72, 132, 168, 267, 285, 323, 443
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	3 cut(s)	93, 132, 476
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	6 cut(s)	174, 366, 371, 383, 471, 475
MboI	GATC	6 cut(s)	172, 364, 369, 381, 469, 473
MboII	GAAGA	2 cut(s)	124, 426
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	3 cut(s)	91, 289, 393
MluNI	TGGCCA	1 cut(s)	296
MnlI	CCTC	7 cut(s)	34, 67, 161, 223, 227, 394, 395
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	2 cut(s)	27, 206
Msp20I	TGGCCA	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	26
NdeII	GATC	6 cut(s)	172, 364, 369, 381, 469, 473
NlaIII	CATG	2 cut(s)	263, 356
NlaIV	GGNNCC	1 cut(s)	371
NmeAIII	GCCGAG	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	218, 491
Ple19I	CGATCG	1 cut(s)	472
Psp124BI	GAGCTC	1 cut(s)	351
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	369
PvuI	CGATCG	1 cut(s)	472
RsaI	GTAC	2 cut(s)	56, 258
RsaNI	GTAC	2 cut(s)	55, 257
SacI	GAGCTC	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	27, 206
SatI	GCNGC	2 cut(s)	217, 490
Sau3AI	GATC	6 cut(s)	172, 364, 369, 381, 469, 473
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	8 cut(s)	45, 153, 196, 218, 256, 274, 351, 426
SfaNI	GCATC	3 cut(s)	93, 132, 476
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	3 cut(s)	91, 289, 393
SsiI	CCGC	1 cut(s)	489
SspI	AATATT	1 cut(s)	223
SstI	GAGCTC	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	424
TaqI	TCGA	3 cut(s)	87, 468, 472
TasI	AATT	3 cut(s)	91, 289, 393
TatI	WGTACW	1 cut(s)	256
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	27, 206
Tru9I	TTAA	2 cut(s)	27, 206
TseI	GCWGC	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	426
Vha464I	CTTAAG	1 cut(s)	26
XapI	RAATTY	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.