pycom12g12760

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Reverse (-)
15182521 .. 15183026
506 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGTTGGGATTGCAATGGGGCATTTCTCTGGAACTGAGGATTGGGATGTACGCTGGACTGGCAACTGTCGGCATATTCGTTATTTGGCATACACATGGTTTTTCTCGAGTCTTAATCTCAGTGGGGATGGCTCCCCCTGTGTCACATAATCCCAGCTCGCAAATTGGGGATAGTTTCAGATTTTCTCCTTTGATGATAACCCCTTTGATGATTTCCATGGTGTCCCTCTTCGTGTTGATCCCCATCAAAATGTTCAACTCTCTCGGAGCCCTCTCGCTTTCTGAGGACGGAAGCTTTGTGCCAATGCCGCATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

106

Amino Acids

11.36

Weight (kDa)

6.9

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 308
AclWI GGATC 1 cut(s) 232
AfaI GTAC 1 cut(s) 50
AgsI TTSAA 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 2 cut(s) 156, 294
AluI AGCT 2 cut(s) 156, 294
AlwI GGATC 1 cut(s) 232
Ama87I CYCGRG 1 cut(s) 105
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
AvaI CYCGRG 1 cut(s) 105
BanII GRGCYC 1 cut(s) 271
BccI CCATC 2 cut(s) 121, 251
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 105
BmiI GGNNCC 2 cut(s) 132, 268
BsaBI GATNNNNATC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 51, 132
BseJI GATNNNNATC 1 cut(s) 242
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 3 cut(s) 26, 132, 273
BseNI ACTGG 1 cut(s) 63
BseYI CCCAGC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 208
BsoBI CYCGRG 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 1 cut(s) 237
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 1 cut(s) 308
BspCNI CTCAG 3 cut(s) 27, 131, 274
BspLI GGNNCC 2 cut(s) 132, 268
BspPI GGATC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 20
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 3 cut(s) 35, 118, 282
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 2 cut(s) 51, 132
BstKTI GATC 1 cut(s) 240
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 59, 307
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 2 cut(s) 51, 132
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 49
CviAII CATG 3 cut(s) 95, 217, 311
CviJI RGCY 4 cut(s) 131, 156, 269, 294
CviKI_1 RGCY 4 cut(s) 131, 156, 269, 294
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 3 cut(s) 35, 118, 282
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 3 cut(s) 98, 220, 314
FaiI YATR 6 cut(s) 74, 90, 96, 147, 218, 312
FaqI GGGAC 1 cut(s) 208
FatI CATG 3 cut(s) 94, 216, 310
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 2 cut(s) 58, 139
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 308
GsaI CCCAGC 1 cut(s) 156
Hin1II CATG 3 cut(s) 98, 220, 314
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 1 cut(s) 108
Hpy188I TCNGA 3 cut(s) 179, 266, 283
Hpy188III TCNNGA 2 cut(s) 29, 105
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 307
HpyF3I CTNAG 3 cut(s) 35, 118, 282
Hsp92II CATG 3 cut(s) 98, 220, 314
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 136, 266
LpnPI CCDG 5 cut(s) 14, 39, 44, 150, 166
MaeIII GTNAC 1 cut(s) 141
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 1 cut(s) 162
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 4 cut(s) 30, 236, 277, 281
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 2 cut(s) 93, 248
MwoI GCNNNNNNNGC 2 cut(s) 59, 307
NcoI CCATGG 1 cut(s) 216
NdeII GATC 1 cut(s) 237
NlaIII CATG 3 cut(s) 98, 220, 314
NlaIV GGNNCC 2 cut(s) 132, 268
NmuCI GTSAC 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PkrI GCNGC 1 cut(s) 309
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 132, 268
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 2 cut(s) 93, 248
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 1 cut(s) 237
SchI GAGTC 1 cut(s) 117
SduI GDGCHC 1 cut(s) 271
SetI ASST 2 cut(s) 158, 296
Sfr274I CTCGAG 1 cut(s) 105
SlaI CTCGAG 1 cut(s) 105
SmiMI CAYNNNNRTG 2 cut(s) 93, 248
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 308
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 106
TasI AATT 1 cut(s) 162
TauI GCSGC 1 cut(s) 310
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 141
Tsp45I GTSAC 1 cut(s) 141
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 1 cut(s) 126
XhoI CTCGAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.