pycom12g13190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Forward (+)
15681115 .. 15681342
228 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGAGCTCCTTCACCAACACCACCAATTTCGACAACCTCATGCTCCAAACCCTAATGGGCAGGCTCCAAATCCGACCCCCCACCAACAACTCGTTCCTCTCCCAAACCCTCGAGGAGCTCCTCTTCGACGCCGCCAATCTCTCCGACGACGACGACGATGAGAACAAGACCCAGCTCGCCAAGGAAGAATCCCGCCTTGAGAAGGATCGATCATCCGGGTTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.56

Weight (kDa)

4.24

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 110
AciI CCGC 2 cut(s) 132, 193
AclWI GGATC 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 3 cut(s) 6, 118, 175
AluI AGCT 3 cut(s) 6, 118, 175
Alw21I GWGCWC 2 cut(s) 8, 120
AlwI GGATC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 110
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 110
BanII GRGCYC 2 cut(s) 8, 120
Bbv12I GWGCWC 2 cut(s) 8, 120
BcnI CCSGG 1 cut(s) 217
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 217
BmeT110I CYCGRG 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 217
Bsa29I ATCGAT 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseCI ATCGAT 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 202
BseRI GAGGAG 2 cut(s) 110, 128
BseYI CCCAGC 1 cut(s) 171
BshVI ATCGAT 1 cut(s) 208
BsiHKAI GWGCWC 2 cut(s) 8, 120
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 8, 120
Bsp143I GATC 2 cut(s) 205, 209
BspACI CCGC 2 cut(s) 132, 193
BspDI ATCGAT 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 65
BspPI GGATC 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 2 cut(s) 205, 209
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 62, 177
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 212
BstKTI GATC 2 cut(s) 208, 212
BstMBI GATC 2 cut(s) 205, 209
BstSCI CCNGG 1 cut(s) 215
Bsu15I ATCGAT 1 cut(s) 208
BsuTUI ATCGAT 1 cut(s) 208
BtsCI GGATG 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 62, 177
ClaI ATCGAT 1 cut(s) 208
CseI GACGC 1 cut(s) 137
CviAII CATG 1 cut(s) 40
CviJI RGCY 4 cut(s) 6, 64, 118, 175
CviKI_1 RGCY 4 cut(s) 6, 64, 118, 175
DpnI GATC 2 cut(s) 207, 211
DpnII GATC 2 cut(s) 205, 209
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Ecl136II GAGCTC 2 cut(s) 6, 118
Eco130I CCWWGG 1 cut(s) 180
Eco24I GRGCYC 2 cut(s) 8, 120
Eco53kI GAGCTC 2 cut(s) 6, 118
Eco88I CYCGRG 1 cut(s) 110
EcoICRI GAGCTC 2 cut(s) 6, 118
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 2 cut(s) 8, 120
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 1 cut(s) 43
FaiI YATR 1 cut(s) 41
FatI CATG 1 cut(s) 39
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 199
FriOI GRGCYC 2 cut(s) 8, 120
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 175
HapII CCGG 1 cut(s) 216
HgaI GACGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 1 cut(s) 43
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 216
HphI GGTGA 1 cut(s) 4
Hpy188I TCNGA 2 cut(s) 74, 145
Hpy99I CGWCG 5 cut(s) 131, 149, 152, 155, 158
HpyAV CCTTC 2 cut(s) 19, 196
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 43
Kzo9I GATC 2 cut(s) 205, 209
LmnI GCTCC 5 cut(s) 11, 48, 69, 115, 123
LpnPI CCDG 2 cut(s) 46, 185
MalI GATC 2 cut(s) 207, 211
MboI GATC 2 cut(s) 205, 209
MboII GAAGA 2 cut(s) 115, 197
MhlI GDGCHC 2 cut(s) 8, 120
MluCI AATT 1 cut(s) 25
MmeI TCCRAC 2 cut(s) 97, 168
MnlI CCTC 5 cut(s) 47, 106, 107, 119, 131
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 217
NciI CCSGG 1 cut(s) 217
NdeII GATC 2 cut(s) 205, 209
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 65
PaeR7I CTCGAG 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 133
Psp124BI GAGCTC 2 cut(s) 8, 120
PspFI CCCAGC 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 65
PspXI VCTCGAGB 1 cut(s) 110
SacI GAGCTC 2 cut(s) 8, 120
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 205, 209
ScrFI CCNGG 1 cut(s) 217
SduI GDGCHC 2 cut(s) 8, 120
SetI ASST 4 cut(s) 8, 39, 120, 177
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 110, 197
SmoI CTYRAG 2 cut(s) 110, 197
Sse9I AATT 1 cut(s) 25
SsiI CCGC 2 cut(s) 132, 193
SstI GAGCTC 2 cut(s) 8, 120
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 180
TaqI TCGA 4 cut(s) 30, 111, 126, 208
TasI AATT 1 cut(s) 25
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 188
XagI CCTNNNNNAGG 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.