pycom12g13390

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Reverse (-)
15845770 .. 15846460
691 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGTTGTGTTGCAGAAACAATGCTGGTGTTATGTTCTGCCCCCACCGGCTTTTGGAAGACGGAATTGAGATGCAATTTGTAACCAATCATCTTGCTCATTTTCTCTTTACAAACCTTATCCTCGAAAAAATGAAGCATACTGCCAGAACTACTGGTATGGAAGGCAGAATTGTGAATTTGTCATCGATTGCTCTTATACACTCTTACAACGCTAGACCACGATACATAAATTTCTTGTTTTGTGTTATTAGTTACTCAGACAAAAGGGCATATGGGCAATCCAAATTAGCAAACATACTTCATGCCAATGAGCTCTCTCGTCGATTGCAGGTGATTTTGTTACCTACATCATGCACATTAACACCACGTGACAGTGATGCTGTTACGTTAATTTGCACTCTACAAAAATGTCCTGATAGTTATCACGCATGCACACTAACACGATCATTTAGAACTACATACATATATTGTTATGAGTTTCACTTACATACTGTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

167

Amino Acids

19.13

Weight (kDa)

8.91

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 319
AcsI RAATTY 2 cut(s) 175, 229
AcvI CACGTG 1 cut(s) 368
AdeI CACNNNGTG 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 52
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw21I GWGCWC 1 cut(s) 315
ApoI RAATTY 2 cut(s) 175, 229
AsuHPI GGTGA 1 cut(s) 343
BanII GRGCYC 1 cut(s) 315
BbrPI CACGTG 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 315
BfaI CTAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 319
BmsI GCATC 2 cut(s) 60, 367
BpiI GAAGAC 1 cut(s) 63
Bsa29I ATCGAT 1 cut(s) 185
BsaAI YACGTR 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 420
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 420
BseCI ATCGAT 1 cut(s) 185
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 157
BshVI ATCGAT 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 1 cut(s) 443
BspCNI CTCAG 1 cut(s) 269
BspDI ATCGAT 1 cut(s) 185
BspMI ACCTGC 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 45
BssMI GATC 1 cut(s) 443
Bst4CI ACNGT 2 cut(s) 374, 493
BstBAI YACGTR 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 1 cut(s) 256
BstKTI GATC 1 cut(s) 446
BstMBI GATC 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 432
BstV2I GAAGAC 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 185
BsuTUI ATCGAT 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 379
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 430
Cfr10I RCCGGY 1 cut(s) 45
ClaI ATCGAT 1 cut(s) 185
CviAII CATG 3 cut(s) 302, 351, 429
CviJI RGCY 2 cut(s) 49, 313
CviKI_1 RGCY 2 cut(s) 49, 313
DdeI CTNAG 1 cut(s) 256
DpnI GATC 1 cut(s) 445
DpnII GATC 1 cut(s) 443
DraIII CACNNNGTG 1 cut(s) 368
Ecl136II GAGCTC 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 315
Eco53kI GAGCTC 1 cut(s) 313
Eco72I CACGTG 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 315
FaeI CATG 3 cut(s) 305, 354, 432
FatI CATG 3 cut(s) 301, 350, 428
FauNDI CATATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 315
FspBI CTAG 1 cut(s) 213
HapII CCGG 1 cut(s) 46
Hin1II CATG 3 cut(s) 305, 354, 432
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 413
Hpy99I CGWCG 1 cut(s) 324
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 2 cut(s) 374, 493
HpyCH4IV ACGT 2 cut(s) 367, 386
HpyCH4V TGCA 6 cut(s) 12, 73, 328, 354, 396, 432
HpyF3I CTNAG 1 cut(s) 256
HpySE526I ACGT 2 cut(s) 367, 386
Hsp92II CATG 3 cut(s) 305, 354, 432
Kzo9I GATC 1 cut(s) 443
LpnPI CCDG 6 cut(s) 9, 59, 138, 157, 314, 426
LweI GCATC 2 cut(s) 60, 367
MaeI CTAG 1 cut(s) 213
MaeII ACGT 2 cut(s) 367, 386
MaeIII GTNAC 5 cut(s) 79, 251, 339, 368, 382
MalI GATC 1 cut(s) 445
MboI GATC 1 cut(s) 443
MboII GAAGA 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 7 cut(s) 63, 74, 168, 175, 229, 284, 390
MnlI CCTC 1 cut(s) 131
MseI TTAA 2 cut(s) 359, 389
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 46
NdeI CATATG 1 cut(s) 271
NdeII GATC 1 cut(s) 443
NlaIII CATG 3 cut(s) 305, 354, 432
NmuCI GTSAC 1 cut(s) 368
NspI RCATGY 1 cut(s) 432
PaeI GCATGC 1 cut(s) 432
PaqCI CACCTGC 1 cut(s) 319
PmaCI CACGTG 1 cut(s) 368
PmlI CACGTG 1 cut(s) 368
Ppu21I YACGTR 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 315
PspCI CACGTG 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 306
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 359, 389
Sau3AI GATC 1 cut(s) 443
SduI GDGCHC 1 cut(s) 315
SetI ASST 6 cut(s) 117, 315, 333, 346, 370, 389
SfaNI GCATC 2 cut(s) 60, 367
SmiMI CAYNNNNRTG 1 cut(s) 306
SphI GCATGC 1 cut(s) 432
Sse9I AATT 7 cut(s) 63, 74, 168, 175, 229, 284, 390
SspMI CTAG 1 cut(s) 213
SstI GAGCTC 1 cut(s) 315
TaaI ACNGT 2 cut(s) 374, 493
TaiI ACGT 2 cut(s) 370, 389
TaqI TCGA 3 cut(s) 123, 185, 322
TasI AATT 7 cut(s) 63, 74, 168, 175, 229, 284, 390
Tru1I TTAA 2 cut(s) 359, 389
Tru9I TTAA 2 cut(s) 359, 389
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 2 cut(s) 146, 290
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 1 cut(s) 379
XapI RAATTY 2 cut(s) 175, 229
XceI RCATGY 1 cut(s) 432
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.