Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16269015 .. 16270509

Gene Structure 1495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGATCTACTAGCTCACTATCAGGTGAAAGCATTTCTCGCAGGGGAATCTCTTCCTTTCTCAGCTGGTCAGTTGGAGGGGATGGCATCTATTGTGAACATGAATGTTAGAGTAGCAAGGAGGCTCTTTAGCAGCAGTCTTCGCTACTGGATATTAGAATATCTGAGAAGGCAGCCAAAAGAAAAAAAATATTGTGCGCTGATTCTTAGATTCATTAAGGATCGGATTGCGGCCATATTGTTAGTTGAGGTGGGACTTCAATCTTCCGTGTGGGTATCCGTGGGAGCCCAAATTGGAGATGAAGTTCTTGTTCGGATAGAAGAAGCTCATCCACGGGATGATGTGCTTTTACTTAAAGAGAGACATATAGTCGCTGATATGACAATGATCTTTATGGGCAAGCAATGTTCTCTTGTTGCACCATCTGTGAGGAGTTATTGTAAGCATCGTCATCTGCAGCAGATGATGCCCAAGAATTATTGGAAAACCGTCAAATATGAGGAACAGGAATTCGCTTCAAGACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000178 GO:0000932 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0022613 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0036464 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNB

Protein Analysis

176

Amino Acids

20.27

Weight (kDa)

9.43

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	2 cut(s)	12, 228
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	509
AgsI	TTSAA	2 cut(s)	260, 519
AhdI	GACNNNNNGTC	1 cut(s)	368
AloI	GAACNNNNNNTCC	2 cut(s)	288, 320
AluBI	AGCT	3 cut(s)	14, 65, 326
AluI	AGCT	3 cut(s)	14, 65, 326
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	2 cut(s)	12, 228
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	3 cut(s)	132, 172, 457
ApoI	RAATTY	1 cut(s)	509
Asp700I	GAANNNNTTC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	131
BbvI	GCAGC	3 cut(s)	144, 184, 469
BccI	CCATC	2 cut(s)	76, 430
BciVI	GTATCC	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	4 cut(s)	133, 173, 231, 458
BlsI	GCNGC	4 cut(s)	134, 174, 232, 459
BmeRI	GACNNNNNGTC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	286
BmsI	GCATC	3 cut(s)	95, 454, 456
BpiI	GAAGAC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	279, 332
BsaXI	ACNNNNNCTCC	4 cut(s)	288, 318, 424, 454
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	279, 332
BseGI	GGATG	3 cut(s)	87, 328, 343
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	2 cut(s)	75, 155
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	445
BseXI	GCAGC	3 cut(s)	144, 184, 469
BshFI	GGCC	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	4, 220, 387
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	2 cut(s)	74, 156
BspLI	GGNNCC	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	459
BspPI	GGATC	2 cut(s)	12, 228
BsrDI	GCAATG	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	279, 332
BssMI	GATC	3 cut(s)	4, 220, 387
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	4 cut(s)	61, 164, 206, 525
BstDSI	CCRYGG	2 cut(s)	279, 332
BstF5I	GGATG	3 cut(s)	87, 328, 343
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	3 cut(s)	7, 223, 390
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	3 cut(s)	4, 220, 387
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 141, 466
BstSFI	CTRYAG	1 cut(s)	455
BstV1I	GCAGC	3 cut(s)	144, 184, 469
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	233
BtgI	CCRYGG	2 cut(s)	279, 332
BtsCI	GGATG	3 cut(s)	87, 328, 343
Cac8I	GCNNGC	1 cut(s)	401
CfoI	GCGC	1 cut(s)	199
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	7 cut(s)	14, 65, 124, 175, 233, 287, 326
CviKI_1	RGCY	7 cut(s)	14, 65, 124, 175, 233, 287, 326
DdeI	CTNAG	4 cut(s)	61, 164, 206, 525
DpnI	GATC	3 cut(s)	6, 222, 389
DpnII	GATC	3 cut(s)	4, 220, 387
DriI	GACNNNNNGTC	1 cut(s)	368
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	57
Eam1105I	GACNNNNNGTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	1 cut(s)	103
FaiI	YATR	7 cut(s)	101, 236, 366, 368, 380, 395, 498
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	4 cut(s)	133, 173, 231, 458
FokI	GGATG	3 cut(s)	94, 315, 350
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	4 cut(s)	133, 173, 231, 458
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	4 cut(s)	133, 173, 231, 458
HaeIII	GGCC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	3 cut(s)	47, 202, 210
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	165, 225, 315
Hpy188III	TCNNGA	1 cut(s)	519
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4V	TGCA	2 cut(s)	419, 457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 141, 466
HpyF3I	CTNAG	4 cut(s)	61, 164, 206, 525
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	3 cut(s)	4, 220, 387
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	5 cut(s)	8, 27, 51, 133, 491
Lsp1109I	GCAGC	3 cut(s)	144, 184, 469
LweI	GCATC	3 cut(s)	95, 454, 456
MaeI	CTAG	1 cut(s)	11
MalI	GATC	3 cut(s)	6, 222, 389
MboI	GATC	3 cut(s)	4, 220, 387
MboII	GAAGA	4 cut(s)	44, 131, 255, 332
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	3 cut(s)	291, 475, 509
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	70, 114, 241, 423, 493
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	2 cut(s)	216, 354
MspA1I	CMGCKG	1 cut(s)	65
MwoI	GCNNNNNNNGC	3 cut(s)	38, 141, 466
NdeII	GATC	3 cut(s)	4, 220, 387
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	3 cut(s)	47, 202, 210
PkrI	GCNGC	4 cut(s)	134, 174, 232, 459
PspN4I	GGNNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	216, 354
SatI	GCNGC	4 cut(s)	133, 173, 231, 458
Sau3AI	GATC	3 cut(s)	4, 220, 387
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	6 cut(s)	16, 27, 67, 252, 328, 526
SfaNI	GCATC	3 cut(s)	95, 454, 456
SfcI	CTRYAG	1 cut(s)	455
Sse9I	AATT	3 cut(s)	291, 475, 509
SsiI	CCGC	1 cut(s)	230
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	490
TasI	AATT	3 cut(s)	291, 475, 509
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	47, 202, 210
Tru1I	TTAA	2 cut(s)	216, 354
Tru9I	TTAA	2 cut(s)	216, 354
TseI	GCWGC	3 cut(s)	132, 172, 457
TspDTI	ATGAA	3 cut(s)	116, 202, 315
TspGWI	ACGGA	2 cut(s)	256, 268
XapI	RAATTY	1 cut(s)	509
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.