Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16840741 .. 16842648

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTGTTATGTATATGAAAATCCATACGAGAATTCTCTGAAATTCGATCATGGCGATGGCTCCTGCGGTTTCTATTTAGATGATAGGTATAGGGGATACAACCGAAGCCGATCCGATTTGGGTTCGAATCCATATAGGAAGCAGTATGATGCTAGTCCCGATGCGGGTATGGCGATGGTGTTTTTGCTCATAAAGGCAAAAGTTCATCACATGATGCATGGCCAACTTCGTTACTGGCCTTCAACTGTTGCAGCTGCTCTTGTCATCCTGGCTTCTTTAGAAGGCAATCGTGATGTGTCTCGCCAACGAGTAATAGAGCTCATGGTTTTGCAAACTCATGTGAGAACAGAAGGTGATGATCTACACGAATGCATAGAGGTATGGATGAATTCTGATATCATGAATCTTGATCATATTTTCAACTTGCAAGAACAACAAATGCATCTTTTCATTAAGGCAATAAGGAGCATTTACATTCCTGGATTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

164

Amino Acids

19.01

Weight (kDa)

6.22

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	66, 164
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	31, 41, 388
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	243, 421
AjnI	CCWGG	2 cut(s)	267, 478
AluBI	AGCT	2 cut(s)	254, 319
AluI	AGCT	2 cut(s)	254, 319
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	105
AoxI	GGCC	2 cut(s)	220, 236
ApeKI	GCWGC	2 cut(s)	251, 254
ApoI	RAATTY	3 cut(s)	31, 41, 388
AsuHPI	GGTGA	1 cut(s)	365
AsuII	TTCGAA	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	241, 263
BccI	CCATC	2 cut(s)	50, 169
BciT130I	CCWGG	2 cut(s)	269, 480
BciVI	GTATCC	1 cut(s)	89
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	89
BisI	GCNGC	2 cut(s)	252, 255
BlsI	GCNGC	2 cut(s)	253, 256
Bme1390I	CCNGG	2 cut(s)	269, 480
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	269, 480
BmsI	GCATC	4 cut(s)	139, 151, 204, 451
Bpu14I	TTCGAA	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	269, 480
BseGI	GGATG	2 cut(s)	264, 390
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	241, 263
BshFI	GGCC	2 cut(s)	222, 238
BsiHKAI	GWGCWC	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	222, 238
Bsp119I	TTCGAA	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	4 cut(s)	46, 110, 358, 409
BspACI	CCGC	2 cut(s)	66, 164
BspANI	GGCC	2 cut(s)	222, 238
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	105
BspT104I	TTCGAA	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	239
BssMI	GATC	4 cut(s)	46, 110, 358, 409
Bst2UI	CCWGG	2 cut(s)	269, 480
Bst4CI	ACNGT	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	264, 390
BstKTI	GATC	4 cut(s)	49, 113, 361, 412
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	4 cut(s)	46, 110, 358, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	2 cut(s)	269, 480
BstSCI	CCNGG	2 cut(s)	267, 478
BstV1I	GCAGC	2 cut(s)	241, 263
BsuI	GTATCC	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	222, 238
BtgZI	GCGATG	2 cut(s)	69, 188
BtsCI	GGATG	2 cut(s)	264, 390
CciI	TCATGA	1 cut(s)	399
CviAII	CATG	6 cut(s)	50, 211, 218, 322, 338, 400
CviJI	RGCY	7 cut(s)	60, 108, 222, 238, 254, 272, 319
CviKI_1	RGCY	7 cut(s)	60, 108, 222, 238, 254, 272, 319
DpnI	GATC	4 cut(s)	48, 112, 360, 411
DpnII	GATC	4 cut(s)	46, 110, 358, 409
EaeI	YGGCCR	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	319
EcoRI	GAATTC	2 cut(s)	31, 388
EcoRII	CCWGG	2 cut(s)	267, 478
EcoRV	GATATC	1 cut(s)	397
EcoT22I	ATGCAT	3 cut(s)	219, 374, 444
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	6 cut(s)	53, 214, 221, 325, 341, 403
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	6 cut(s)	49, 210, 217, 321, 337, 399
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	252, 255
FokI	GGATG	2 cut(s)	251, 397
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	2 cut(s)	252, 255
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	2 cut(s)	252, 255
HaeIII	GGCC	2 cut(s)	222, 238
Hin1II	CATG	6 cut(s)	53, 214, 221, 325, 341, 403
HinfI	GANTC	3 cut(s)	127, 403, 483
HphI	GGTGA	1 cut(s)	365
Hpy188I	TCNGA	3 cut(s)	39, 115, 394
Hpy188III	TCNNGA	4 cut(s)	158, 290, 400, 407
HpyAV	CCTTC	3 cut(s)	249, 275, 344
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	6 cut(s)	217, 251, 331, 372, 427, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
Hsp92II	CATG	6 cut(s)	53, 214, 221, 325, 341, 403
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	46, 110, 358, 409
LmnI	GCTCC	2 cut(s)	65, 465
LpnPI	CCDG	6 cut(s)	76, 220, 254, 281, 465, 472
Lsp1109I	GCAGC	2 cut(s)	241, 263
LweI	GCATC	4 cut(s)	139, 151, 204, 451
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	4 cut(s)	48, 112, 360, 411
MboI	GATC	4 cut(s)	46, 110, 358, 409
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	3 cut(s)	31, 41, 388
MluNI	TGGCCA	1 cut(s)	222
MnlI	CCTC	1 cut(s)	370
Mox20I	TGGCCA	1 cut(s)	222
Mph1103I	ATGCAT	3 cut(s)	219, 374, 444
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	269, 480
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	2 cut(s)	269, 480
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	4 cut(s)	46, 110, 358, 409
NlaIII	CATG	6 cut(s)	53, 214, 221, 325, 341, 403
NlaIV	GGNNCC	1 cut(s)	61
NsiI	ATGCAT	3 cut(s)	219, 374, 444
NspV	TTCGAA	1 cut(s)	125
PagI	TCATGA	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	374
PfeI	GAWTC	3 cut(s)	127, 403, 483
PfoI	TCCNGGA	1 cut(s)	478
PkrI	GCNGC	2 cut(s)	253, 256
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	2 cut(s)	267, 478
PspGI	CCWGG	2 cut(s)	267, 478
PspN4I	GGNNCC	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	2 cut(s)	252, 255
Sau3AI	GATC	4 cut(s)	46, 110, 358, 409
ScrFI	CCNGG	2 cut(s)	269, 480
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	6 cut(s)	89, 256, 321, 355, 381, 491
SfaNI	GCATC	4 cut(s)	139, 151, 204, 451
SfuI	TTCGAA	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	3 cut(s)	31, 41, 388
SsiI	CCGC	2 cut(s)	66, 164
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	2 cut(s)	267, 478
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	45, 125
TasI	AATT	3 cut(s)	31, 41, 388
TfiI	GAWTC	3 cut(s)	127, 403, 483
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TseI	GCWGC	2 cut(s)	251, 254
TspDTI	ATGAA	5 cut(s)	30, 194, 401, 416, 439
XapI	RAATTY	3 cut(s)	31, 41, 388
XspI	CTAG	1 cut(s)	153
Zsp2I	ATGCAT	3 cut(s)	219, 374, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.