Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17089215 .. 17089831

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAGGCCCAATGATTCGACTGTTGTGGTCAGTCTTGCTTGCGGCAGTCTTTCAGGCATTGCCTCATCAACAGCAACATTCCCTCTGGATCTTGTAAGGCGAAGAATGCAGTTGGAGGGGGCTGGTGGTCGAGTCCGCCTGCGGGGCTTGTACAGAGGGATAATGCCAGAATATTACAAGGTCGTTCCAAGTGTAGGGATTGTCTTCATGACTCACGAGACATTGAAAATGCTTTTTGCCCGCATCCAATCAAGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

87

Amino Acids

9.46

Weight (kDa)

10.15

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	6 - 43	1.2e-08	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	42, 136, 142, 241
AclWI	GGATC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	142, 194
AgsI	TTSAA	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	6
BauI	CACGAG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	212
BglI	GCCNNNNNGGC	1 cut(s)	144
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 194
Bse3DI	GCAATG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	142, 194
BseMI	GCAATG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	7
BslI	CCNNNNNNNGG	2 cut(s)	142, 194
BsmAI	GTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	7
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	4 cut(s)	42, 136, 142, 241
BspANI	GGCC	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	207
BspPI	GGATC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	150
BssMI	GATC	1 cut(s)	88
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	22
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	40, 140, 241
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 144
BstV2I	GAAGAC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	40, 140, 241
CciI	TCATGA	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	3 cut(s)	7, 122, 147
CviKI_1	RGCY	3 cut(s)	7, 122, 147
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	125
FaeI	CATG	1 cut(s)	211
FaiI	YATR	1 cut(s)	209
FatI	CATG	1 cut(s)	207
FauI	CCCGC	2 cut(s)	135, 248
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	211
HinfI	GANTC	3 cut(s)	14, 132, 211
Hpy188III	TCNNGA	3 cut(s)	86, 208, 215
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 144
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	5 cut(s)	39, 71, 108, 152, 180
LweI	GCATC	1 cut(s)	252
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	114, 196
MflI	RGATCY	1 cut(s)	88
MlyI	GAGTC	2 cut(s)	141, 205
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	4 cut(s)	73, 93, 109, 149
Mva1269I	GAATGC	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	106, 144
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	211
PagI	TCATGA	1 cut(s)	207
PctI	GAATGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	44
PleI	GAGTC	2 cut(s)	140, 205
PpsI	GAGTC	2 cut(s)	140, 205
PspPI	GGNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	2 cut(s)	141, 205
SetI	ASST	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	252
SsiI	CCGC	4 cut(s)	42, 136, 142, 241
SspI	AATATT	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	17, 130
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.