pycom12g16450

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Reverse (-)
18761260 .. 18761912
653 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGGACATGGATATCATTCTGGGTCGTCGGGAAGAAAAGCAAGGAAAGCCTGTCATAGTAATATTGGTGGGTGCCCCTGGAACCGGCAAGTCCACCTTCTGCGAACATGTCATGCACTCCTCCTCACTCTGCCTTGGGTACGCGTTTGCAGGGTTTGCAAGAATCACTTGTTGCCAGAGTGAGAGTGACGTTCAATCTGCCATTGATGCATGTAGTGGACTTGGTCCGTTAGATACACTTCCCAGTGGTTATTTGGTTTTAAGAGCCCCGGTGCGAAAATTCAACTAG

Protein Analysis

96

Amino Acids

10.13

Weight (kDa)

6.69

Isoelectric Point (pI)

61.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 1 cut(s) 143
AcsI RAATTY 1 cut(s) 278
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 83
AflIII ACRYGT 2 cut(s) 106, 141
AgsI TTSAA 2 cut(s) 194, 283
AjnI CCWGG 1 cut(s) 76
ApoI RAATTY 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 1 cut(s) 269
BfaI CTAG 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 78, 269
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 73, 82
BmrFI CCNGG 2 cut(s) 78, 269
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 269
BsaJI CCNNGG 3 cut(s) 76, 133, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 3 cut(s) 76, 133, 267
BseLI CCNNNNNNNGG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 243
BseRI GAGGAG 2 cut(s) 109, 112
BseSI GKGCMC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 2 cut(s) 84, 269
BslI CCNNNNNNNGG 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 76, 268
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 73, 82
BspT107I GGYRCC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 76, 133, 267
BssT1I CCWWGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 155
BstFNI CGCG 1 cut(s) 143
BstMWI GCNNNNNNNGC 3 cut(s) 46, 155, 206
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 2 cut(s) 110, 213
BstSCI CCNGG 2 cut(s) 76, 267
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 139
CviAII CATG 4 cut(s) 7, 107, 112, 210
CviJI RGCY 2 cut(s) 49, 266
CviKI_1 RGCY 2 cut(s) 49, 266
CviQI GTAC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 268
Eco32I GATATC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 76
EcoRV GATATC 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 4 cut(s) 10, 110, 115, 213
FaiI YATR 5 cut(s) 8, 56, 108, 113, 211
FalI AAGNNNNNCTT 4 cut(s) 80, 112, 151, 183
FatI CATG 4 cut(s) 6, 106, 111, 209
FriOI GRGCYC 1 cut(s) 268
FspBI CTAG 1 cut(s) 286
HapII CCGG 2 cut(s) 84, 269
Hin1II CATG 4 cut(s) 10, 110, 115, 213
HinfI GANTC 1 cut(s) 162
HpaII CCGG 2 cut(s) 84, 269
Hpy166II GTNNAC 2 cut(s) 93, 218
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 2 cut(s) 93, 218
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 4 cut(s) 115, 149, 158, 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 155, 206
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 4 cut(s) 10, 110, 115, 213
LpnPI CCDG 9 cut(s) 5, 63, 63, 90, 97, 135, 188, 256, 282
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 286
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 185
MboII GAAGA 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 76, 268
MluCI AATT 1 cut(s) 278
MluI ACGCGT 1 cut(s) 141
MnlI CCTC 2 cut(s) 130, 133
Mph1103I ATGCAT 1 cut(s) 211
MseI TTAA 1 cut(s) 260
MspI CCGG 2 cut(s) 84, 269
MspR9I CCNGG 2 cut(s) 78, 269
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 46, 155, 206
NciI CCSGG 1 cut(s) 269
NlaIII CATG 4 cut(s) 10, 110, 115, 213
NlaIV GGNNCC 2 cut(s) 73, 82
NmuCI GTSAC 1 cut(s) 185
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 2 cut(s) 110, 213
PciI ACATGT 1 cut(s) 106
PfeI GAWTC 1 cut(s) 162
PflFI GACNNNGTC 1 cut(s) 222
PscI ACATGT 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 73, 82
PspPI GGNCC 1 cut(s) 224
PsyI GACNNNGTC 1 cut(s) 222
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 260
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 78, 269
SduI GDGCHC 2 cut(s) 76, 268
SetI ASST 2 cut(s) 98, 192
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 224
Sse9I AATT 1 cut(s) 278
SspI AATATT 1 cut(s) 63
SspMI CTAG 1 cut(s) 286
StyD4I CCNGG 2 cut(s) 76, 267
StyI CCWWGG 1 cut(s) 133
TaiI ACGT 1 cut(s) 192
TasI AATT 1 cut(s) 278
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 250
Tth111I GACNNNGTC 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 1 cut(s) 278
XceI RCATGY 2 cut(s) 110, 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XspI CTAG 1 cut(s) 286
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.