pycom12g16530

Nudix hydrolase 15, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
N/A
Physical Location & Seq
Reverse (-)
18816584 .. 18817696
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGCATATAGTCGGCCAAAAATTACAAATGGCTAGCATAGAGGATTGGGGAAGAAGCCAAACTCTACACAAGCTTGCCAAGCAGCTTGAGTTTTACAAACCTCCCTCCGCACTGGATAAATCGGAGGATGATAACGAAGGCGATACATCTGTAAACTCTGGTATAAGCTTCAACTCTTTAGCAGTCGGCAATGAAGAGTGTTCTTGTGTCAAGTTGAGGTTGAGAGAGAGAAGAGCAGCTGTCCTGATATGCATCTTTGAGGGTGCTGAGGGTGAGCTAAGAGTTATTCTTACTAGGAGATCCATGAATTTGGCATCACACCCAGATGGAATACGCCCGGCGGAAAAATGGATAAGGAAGATGCAGATGAATCTGCAACAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
NUDIX

Protein Analysis

129

Amino Acids

14.51

Weight (kDa)

7.77

Isoelectric Point (pI)

67.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 108, 341
AclWI GGATC 1 cut(s) 294
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 307
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 5 cut(s) 73, 85, 168, 239, 277
AluI AGCT 5 cut(s) 73, 85, 168, 239, 277
AlwI GGATC 1 cut(s) 294
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 82, 236
ApoI RAATTY 1 cut(s) 307
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 284
AsuNHI GCTAGC 1 cut(s) 32
BaeI ACNNNNGTAYC 2 cut(s) 135, 168
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 94, 248
BccI CCATC 1 cut(s) 320
BcnI CCSGG 1 cut(s) 338
BfaI CTAG 2 cut(s) 33, 294
BisI GCNGC 2 cut(s) 83, 237
BlsI GCNGC 2 cut(s) 84, 238
Bme1390I CCNGG 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 3 cut(s) 261, 323, 351
BmtI GCTAGC 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 251
BseGI GGATG 1 cut(s) 133
BseJI GATNNNNATC 1 cut(s) 251
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 94, 248
BshFI GGCC 1 cut(s) 15
BsiSI CCGG 1 cut(s) 338
BsnI GGCC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 299
BspACI CCGC 2 cut(s) 108, 341
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 259
BspOI GCTAGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 294
BspQI GCTCTTC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 196
BsrI ACTGG 1 cut(s) 117
BssMI GATC 1 cut(s) 299
Bst6I CTCTTC 2 cut(s) 189, 226
BstC8I GCNNGC 2 cut(s) 34, 75
BstDEI CTNAG 2 cut(s) 267, 278
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 1 cut(s) 302
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 94, 248
BstX2I RGATCY 1 cut(s) 299
BstXI CCANNNNNNTGG 1 cut(s) 310
BstYI RGATCY 1 cut(s) 299
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 34, 75
CviAII CATG 1 cut(s) 304
CviJI RGCY 8 cut(s) 15, 32, 57, 73, 85, 168, 239, 277
CviKI_1 RGCY 8 cut(s) 15, 32, 57, 73, 85, 168, 239, 277
DdeI CTNAG 2 cut(s) 267, 278
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 2 cut(s) 189, 226
EarI CTCTTC 2 cut(s) 189, 226
EciI GGCGGA 1 cut(s) 356
EcoT22I ATGCAT 2 cut(s) 6, 254
FaeI CATG 1 cut(s) 307
FaiI YATR 6 cut(s) 6, 8, 38, 164, 250, 305
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 83, 237
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 83, 237
FspBI CTAG 2 cut(s) 33, 294
GluI GCNGC 2 cut(s) 83, 237
HaeIII GGCC 1 cut(s) 15
HapII CCGG 1 cut(s) 338
Hin1II CATG 1 cut(s) 307
HindIII AAGCTT 2 cut(s) 71, 166
HinfI GANTC 1 cut(s) 370
HpaII CCGG 1 cut(s) 338
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 131
HpyCH4V TGCA 4 cut(s) 4, 252, 364, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 2 cut(s) 267, 278
Hsp92II CATG 1 cut(s) 307
Kzo9I GATC 1 cut(s) 299
LguI GCTCTTC 1 cut(s) 226
LpnPI CCDG 5 cut(s) 98, 144, 257, 336, 351
Lsp1109I GCAGC 2 cut(s) 94, 248
LweI GCATC 3 cut(s) 261, 323, 351
MaeI CTAG 2 cut(s) 33, 294
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 4 cut(s) 63, 206, 243, 370
MflI RGATCY 1 cut(s) 299
MluCI AATT 2 cut(s) 20, 307
MnlI CCTC 7 cut(s) 34, 111, 115, 118, 210, 253, 262
Mph1103I ATGCAT 2 cut(s) 6, 254
MslI CAYNNNNRTG 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 338
NdeII GATC 1 cut(s) 299
NheI GCTAGC 1 cut(s) 32
NlaIII CATG 1 cut(s) 307
NsiI ATGCAT 2 cut(s) 6, 254
PciSI GCTCTTC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 370
PkrI GCNGC 2 cut(s) 84, 238
PsuI RGATCY 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 226
SatI GCNGC 2 cut(s) 83, 237
Sau3AI GATC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 338
SetI ASST 7 cut(s) 75, 87, 103, 170, 221, 241, 279
SfaNI GCATC 3 cut(s) 261, 323, 351
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 20, 307
SsiI CCGC 2 cut(s) 108, 341
SspMI CTAG 2 cut(s) 33, 294
StyD4I CCNGG 1 cut(s) 336
TasI AATT 2 cut(s) 20, 307
TfiI GAWTC 1 cut(s) 370
TscAI CASTG 1 cut(s) 117
TseI GCWGC 2 cut(s) 82, 236
TspDTI ATGAA 3 cut(s) 207, 320, 383
TspRI CASTG 1 cut(s) 117
XapI RAATTY 1 cut(s) 307
XspI CTAG 2 cut(s) 33, 294
Zsp2I ATGCAT 2 cut(s) 6, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.